STRINGSTRING
plxna3 plxna3 ntn1b ntn1b epha4b epha4b olig4 olig4 nkx2.1 nkx2.1 plxna4 plxna4 fgf8a fgf8a msna msna isl1 isl1 robo2 robo2 sp8a sp8a gbx2 gbx2 zic2a zic2a gsx2 gsx2 olig2 olig2 emx2 emx2 shhb shhb zic2b zic2b gsx1 gsx1 her12 her12 olig3 olig3 plxna2 plxna2 slit1b slit1b robo2-2 robo2-2 ebf1b ebf1b plxna1a plxna1a unc5a unc5a nkx2.4b nkx2.4b ntn1a ntn1a pax6a pax6a sema6a sema6a nrg1 nrg1 ntn2 ntn2 shha shha epha4a epha4a lhx2b lhx2b celsr3 celsr3 nrcama nrcama ephb1 ephb1 fzd3b fzd3b slit1a slit1a epha7 epha7 erbb4a erbb4a fzd3a fzd3a ezrb ezrb
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
plxna3Plexin A3; Coreceptor for class 3 semaphorins. Necessary for signaling by class 3 semaphorins and subsequent remodeling of the cytoskeleton. Plays a role in axon guidance in the developing nervous system. Class 3 semaphorins bind to a complex composed of a neuropilin and a plexin. The plexin modulates the affinity of the complex for specific semaphorins, and its cytoplasmic domain is required for the activation of down-stream signaling events in the cytoplasm. (1892 aa)
ntn1bNetrin 1b. (602 aa)
epha4bEph receptor A4b. (976 aa)
olig4Oligodendrocyte transcription factor 4. (244 aa)
nkx2.1NK2 homeobox 1b. (346 aa)
plxna4Plexin-A4; Involved in the development of primary sensory neurons especially in branching of the peripheral axons. Interacts with the SLIT2 signaling specifically to promote axonal branching of Rohon-Beard neurons and the trigeminal sensory ganglion neurons. (1903 aa)
fgf8aFibroblast growth factor 8; Plays an important role in the regulation of embryonic development, cell proliferation, cell differentiation and cell migration (By similarity). Required for Kupffer's vesicle ciliogenesis. (210 aa)
msnaMoesin a. (579 aa)
isl1Insulin gene enhancer protein isl-1; DNA-binding transcriptional activator. Recognizes and binds to the consensus octamer binding site 5'-ATAATTAA-3' in promoter of target genes. Plays a fundamental role in the gene regulatory network essential for retinal ganglion cell (RGC) differentiation. May be involved in subtype specialization of primary motoneurons. May bind to insulin gene enhancer sequences. Essential for heart development (By similarity). (349 aa)
robo2Roundabout, axon guidance receptor, homolog 2 (Drosophila). (1387 aa)
sp8aSp8 transcription factor a. (406 aa)
gbx2Gastrulation brain homeo box 2. (342 aa)
zic2aZIC family member 2 (Odd-paired homolog, Drosophila), A. (445 aa)
gsx2GS homeobox 2. (242 aa)
olig2Oligodendrocyte lineage transcription factor 2. (273 aa)
emx2Empty spiracles homeobox 2. (247 aa)
shhbTiggy-winkle hedgehog protein C-product; Intercellular signal essential for a variety of patterning events during development. Involved in dorso-ventral patterning of the brain and in early patterning of the developing eyes. (416 aa)
zic2bZIC family member 2 (Odd-paired homolog, Drosophila) B. (427 aa)
gsx1Genetic screen homeobox 1 protein. (243 aa)
her12BHLH transcription factor. (155 aa)
olig3Oligodendrocyte transcription factor 3. (255 aa)
plxna2Plexin A2. (1902 aa)
slit1bSlit homolog 1b (Drosophila). (1532 aa)
robo2-2Roundabout, axon guidance receptor, homolog 2 (Drosophila). (136 aa)
ebf1bEBF transcription factor 1b. (603 aa)
plxna1aPlexin A1a. (1891 aa)
unc5aUnc-5 netrin receptor A. (860 aa)
nkx2.4bNK2 homeobox 1a. (307 aa)
ntn1aNetrin-1a. (603 aa)
pax6aPaired box protein Pax-6; Transcription factor expressed in spatially restricted regions of the neural tube during embryonic development; Belongs to the paired homeobox family. (451 aa)
sema6aSema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A. (604 aa)
nrg1Neuregulin 1. (730 aa)
ntn2Netrin 2. (609 aa)
shhaSonic hedgehog protein A N-product; Sonic hedgehog protein: The C-terminal part of the sonic hedgehog protein precursor displays an autoproteolysis and a cholesterol transferase activity (By similarity). Both activities result in the cleavage of the full-length protein into two parts (ShhN and ShhC) followed by the covalent attachment of a cholesterol moiety to the C-terminal of the newly generated ShhN (By similarity). Both activities occur in the reticulum endoplasmic (By similarity). Once cleaved, ShhC is degraded in the endoplasmic reticulum (By similarity). (418 aa)
epha4aEphrin type-A receptor 4a; Receptor tyrosine kinase which binds membrane-bound ephrin family ligands residing on adjacent cells, leading to contact-dependent bidirectional signaling into neighboring cells. The signaling pathway downstream of the receptor is referred to as forward signaling while the signaling pathway downstream of the ephrin ligand is referred to as reverse signaling. Highly promiscuous, it has the unique property among Eph receptors to bind and to be physiologically activated by both GPI- anchored ephrin-A and transmembrane ephrin-B ligands including efna1 and efnb3. [...] (995 aa)
lhx2bLIM homeobox 2b. (427 aa)
celsr3Cadherin, EGF LAG seven-pass G-type receptor 3. (2065 aa)
nrcamaNeuronal cell adhesion molecule a. (1285 aa)
ephb1EPH receptor B1. (694 aa)
fzd3bFrizzled class receptor 3b; Belongs to the G-protein coupled receptor Fz/Smo family. (667 aa)
slit1aSlit homolog 1a (Drosophila). (1524 aa)
epha7Eph receptor A7. (1016 aa)
erbb4aReceptor protein-tyrosine kinase. (1388 aa)
fzd3aTransmembrane receptor frizzled-3; Belongs to the G-protein coupled receptor Fz/Smo family. (685 aa)
ezrbEzrin b. (583 aa)
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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