STRINGSTRING
mylpfa mylpfa sox6 sox6 smarca4a smarca4a smyhc1 smyhc1 odc1 odc1 myom1a myom1a myhz1.3 myhz1.3 myf5 myf5 myhz2 myhz2 pbx4 pbx4 agr2 agr2 tnnt3a tnnt3a esr1 esr1 prdm1a prdm1a myl1 myl1 myod1 myod1 myog myog pbx2 pbx2 atp1a2a atp1a2a ryr1b ryr1b myf6 myf6 atp2a1 atp2a1 egr2b egr2b
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
mylpfaMyosin light chain, phosphorylatable, fast skeletal muscle a. (169 aa)
sox6SRY-box transcription factor 6. (816 aa)
smarca4aSWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin, subfamily a, member 4a. (1627 aa)
smyhc1Slow myosin heavy chain 1; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1938 aa)
odc1Ornithine decarboxylase 1; Belongs to the Orn/Lys/Arg decarboxylase class-II family. (461 aa)
myom1aMyomesin 1a (skelemin). (1483 aa)
myhz1.3Myosin, heavy polypeptide 1.3, skeletal muscle; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1937 aa)
myf5Myogenic factor. (237 aa)
myhz2Myosin, heavy polypeptide 2, fast muscle-specific; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1935 aa)
pbx4Pre-B-cell leukemia transcription factor 4. (343 aa)
agr2Anterior gradient protein 2 homolog; Belongs to the AGR family. (171 aa)
tnnt3aTroponin T type 3a (skeletal, fast). (230 aa)
esr1Estrogen receptor; The steroid hormones and their receptors are involved in the regulation of eukaryotic gene expression and affect cellular proliferation and differentiation in target tissues; Belongs to the nuclear hormone receptor family. NR3 subfamily. (569 aa)
prdm1aPR domain-containing 1a, with ZNF domain. (776 aa)
myl1Myosin, light chain 1, alkali; skeletal, fast; Non-regulatory myosin light chain required for proper formation and/or maintenance of myofibers, and thus appropriate muscle function. (190 aa)
myod1Myoblast determination protein 1 homolog; May act as a transcriptional activator that promotes transcription of muscle-specific target genes and plays a role in muscle differentiation. (275 aa)
myogMyogenin. (256 aa)
pbx2Pre-B-cell leukemia homeobox 2. (403 aa)
atp1a2aSodium/potassium-transporting ATPase subunit alpha. (1017 aa)
ryr1bRyanodine receptor 1b (skeletal). (5078 aa)
myf6Myogenic factor 6; Involved in muscle differentiation (myogenic factor). Induces fibroblasts to differentiate into myoblasts. Probable sequence specific DNA-binding protein (By similarity). (239 aa)
atp2a1Calcium-transporting ATPase; This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium. (1005 aa)
egr2bEarly growth response protein 2b; Sequence-specific DNA-binding transcription factor. Binds to two specific DNA sites located in the promoter region of HOXA4. (412 aa)
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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