STRINGSTRING
clrn1 clrn1 opn1mw4 opn1mw4 opn1mw1 opn1mw1 opn1mw3 opn1mw3 casp3a casp3a rho rho opn1mw2 opn1mw2 msna msna magi2a magi2a gnaq gnaq adgrv1 adgrv1 myo7ab myo7ab cdh23 cdh23 dlg1 dlg1 rflna rflna dlg4 dlg4 acta1b acta1b casp3b casp3b ezrb ezrb ush2a ush2a rhol rhol whrna whrna ush1c ush1c gnas gnas LOC108190403 LOC108190403 F6NLW6_DANRE F6NLW6_DANRE cdh23-2 cdh23-2 hars hars opn6b opn6b cib2 cib2 mag mag Exorh Exorh pdzd7a pdzd7a myo7aa myo7aa ush1gb ush1gb tjp1a tjp1a
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
clrn1Clrn1 protein. (232 aa)
opn1mw4Green-sensitive opsin-4; Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to cis-retinal. (349 aa)
opn1mw1Green-sensitive opsin-1; Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to cis-retinal. (349 aa)
opn1mw3Green-sensitive opsin-3; Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to cis-retinal; Belongs to the G-protein coupled receptor 1 family. Opsin subfamily. (349 aa)
casp3aCaspase 3, apoptosis-related cysteine peptidase a; Belongs to the peptidase C14A family. (282 aa)
rhoRhodopsin; Photoreceptor required for image-forming vision at low light intensity. While most salt water fish species use retinal as chromophore, most freshwater fish use 3-dehydroretinal, or a mixture of retinal and 3-dehydroretinal (By similarity). Light-induced isomerization of 11-cis to all-trans retinal triggers a conformational change that activates signaling via G-proteins. Subsequent receptor phosphorylation mediates displacement of the bound G-protein alpha subunit by arrestin and terminates signaling (By similarity). (354 aa)
opn1mw2Green-sensitive opsin-2; Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to cis-retinal; Belongs to the G-protein coupled receptor 1 family. Opsin subfamily. (349 aa)
msnaMoesin a. (579 aa)
magi2aMembrane-associated guanylate kinase, WW and PDZ domain-containing 2a. (1503 aa)
gnaqGuanine nucleotide-binding protein (G protein), q polypeptide. (359 aa)
adgrv1Adhesion G-protein coupled receptor V1; Receptor that may have an important role in the development of the sensory nervous system. (6198 aa)
myo7abMyosin VIIAb; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (2190 aa)
cdh23Cadherin-related 23. (2883 aa)
dlg1Disks large homolog 1; Essential multidomain scaffolding protein required for normal development. Recruits channels, receptors and signaling molecules to discrete plasma membrane domains in polarized cells. May play a role in adherens junction assembly, signal transduction and cell proliferation (By similarity). May play a role in synapse assembly and function. Belongs to the MAGUK family. (909 aa)
rflnaFamily with sequence similarity 101, member A. (222 aa)
dlg4Disks large homolog 4; Plays a role in synapse assembly and function. Plays a role in synaptic plasticity. (707 aa)
acta1bActin alpha 1, skeletal muscle b. (377 aa)
casp3bCaspase 3, apoptosis-related cysteine peptidase b; Belongs to the peptidase C14A family. (285 aa)
ezrbEzrin b. (583 aa)
ush2aUsher syndrome 2A (autosomal recessive, mild). (5236 aa)
rholRhodopsin. (355 aa)
whrnaWhirlin a. (939 aa)
ush1cUsher syndrome 1C (Autosomal recessive, severe). (548 aa)
gnasGNAS complex locus. (379 aa)
LOC108190403Si:ch73-194h10.2; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (2220 aa)
F6NLW6_DANRESi:ch211-242b18.1. (2277 aa)
cdh23-2Cadherin-related 23. (436 aa)
harsHistidine--tRNA ligase; Catalyzes the aminoacylation of histidyl-tRNA. Belongs to the class-II aminoacyl-tRNA synthetase family. (520 aa)
opn6bOpsin 6, group member b; Belongs to the G-protein coupled receptor 1 family. Opsin subfamily. (391 aa)
cib2Calcium and integrin-binding family member 2. (187 aa)
magMyelin-associated glycoprotein. (653 aa)
ExorhRhodopsin. (168 aa)
pdzd7aPDZ domain-containing 7a. (954 aa)
myo7aaMyosin VIIAa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (2190 aa)
ush1gbUsher syndrome 1Gb (autosomal recessive). (488 aa)
tjp1aTight junction protein 1a; Belongs to the MAGUK family. (1689 aa)
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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