STRINGSTRING
acta1b acta1b lhfpl5b lhfpl5b TMC1 TMC1 ush1c ush1c cib2 cib2 pcdh15a pcdh15a pcdh15b pcdh15b myo7aa myo7aa cdh23 cdh23
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
acta1bActin alpha 1, skeletal muscle b. (377 aa)
lhfpl5bLHFPL tetraspan subfamily member 5b. (221 aa)
TMC1Transmembrane channel-like protein 1; Probable ion channel required for the normal function of hair cells (By similarity). Component of the hair cell's mechanotransduction (MET) machinery ; Belongs to the TMC family. (990 aa)
ush1cUsher syndrome 1C (Autosomal recessive, severe). (548 aa)
cib2Calcium and integrin-binding family member 2. (187 aa)
pcdh15aProtocadherin-related 15a. (1796 aa)
pcdh15bProtocadherin-related 15b. (1907 aa)
myo7aaMyosin VIIAa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (2190 aa)
cdh23Cadherin-related 23. (2883 aa)
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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