STRINGSTRING
tnni1a tnni1a col1a1b col1a1b col1a1a col1a1a myl1 myl1 ambp ambp pck1 pck1 tnni2a.4 tnni2a.4 ttr ttr tll1 tll1 zp3d.1 zp3d.1 acta1b acta1b afp4 afp4 fhl2a fhl2a cebpb cebpb ccnb1 ccnb1 entpd1 entpd1 col4a5 col4a5 apoda.1 apoda.1 pllp pllp COX1 COX1 cldna cldna mkrn4 mkrn4 tmsb4x tmsb4x cdx4 cdx4 serpina1 serpina1 myhc4 myhc4 ddx42 ddx42 E9QBK2_DANRE E9QBK2_DANRE srsf1b srsf1b col1a2 col1a2 LOC568656 LOC568656 thbs1b thbs1b tnnt3b tnnt3b g3bp1 g3bp1 fkbp7 fkbp7 tnnt2a tnnt2a hao1 hao1 map1lc3c map1lc3c ldha ldha sox32 sox32 ccne1 ccne1 tnni4b.2 tnni4b.2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
tnni1aTroponin I type 1a (skeletal, slow). (181 aa)
col1a1bCollagen, type I, alpha 1b. (1449 aa)
col1a1aCollagen, type I, alpha 1a. (1447 aa)
myl1Myosin, light chain 1, alkali; skeletal, fast; Non-regulatory myosin light chain required for proper formation and/or maintenance of myofibers, and thus appropriate muscle function. (190 aa)
ambpAlpha-1-microglobulin/bikunin precursor. (346 aa)
pck1Phosphoenolpyruvate carboxykinase 1 (soluble). (630 aa)
tnni2a.4Troponin I type 2a (skeletal, fast), tandem duplicate 4. (176 aa)
ttrTransthyretin; Thyroid hormone-binding protein. Probably transports thyroxine from the bloodstream to the brain. (149 aa)
tll1Dorsal-ventral patterning tolloid-like protein 1; Required for patterning ventral tissues of the tail. May increase bone morphogenetic protein (BMP) activity at the end of gastrulation by proteolytic cleavage of chordin and release of BMP from inactive complexes. (1022 aa)
zp3d.1Zona pellucida glycoprotein 3d tandem duplicate 1. (599 aa)
acta1bActin alpha 1, skeletal muscle b. (377 aa)
afp4Type IV antifreeze protein A. (130 aa)
fhl2aFour and a half LIM domains 2a. (279 aa)
cebpbCCAAT/enhancer-binding protein. (280 aa)
ccnb1Cyclin B1; Belongs to the cyclin family. (397 aa)
entpd1Ectonucleoside triphosphate diphosphohydrolase 1; Belongs to the GDA1/CD39 NTPase family. (492 aa)
col4a5Collagen, type IV, alpha 5 (Alport syndrome). (1679 aa)
apoda.1Apolipoprotein Da, duplicate 1; Belongs to the calycin superfamily. Lipocalin family. (185 aa)
pllpNovel protein similar to vertebrate transmembrane 4 superfamily member 11 (Plasmolipin) (TM4SF11). (173 aa)
COX1Cytochrome c oxidase subunit 1; Component of the cytochrome c oxidase, the last enzyme in the mitochondrial electron transport chain which drives oxidative phosphorylation. The respiratory chain contains 3 multisubunit complexes succinate dehydrogenase (complex II, CII), ubiquinol- cytochrome c oxidoreductase (cytochrome b-c1 complex, complex III, CIII) and cytochrome c oxidase (complex IV, CIV), that cooperate to transfer electrons derived from NADH and succinate to molecular oxygen, creating an electrochemical gradient over the inner membrane that drives transmembrane transport and t [...] (516 aa)
cldnaClaudin a. (206 aa)
mkrn4Makorin, ring finger protein, 4. (397 aa)
tmsb4xThymosin beta; Plays an important role in the organization of the cytoskeleton. Binds to and sequesters actin monomers (G actin) and therefore inhibits actin polymerization. Belongs to the thymosin beta family. (44 aa)
cdx4Caudal type homeo box transcription factor 4. (270 aa)
serpina1Serine (Or cysteine) proteinase inhibitor, clade A (Alpha-1 antiproteinase, antitrypsin), member 1; Belongs to the serpin family. (429 aa)
myhc4Myosin heavy chain 4; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1935 aa)
ddx42DEAD (Asp-Glu-Ala-Asp) box helicase 42. (908 aa)
E9QBK2_DANRESi:ch73-160h15.3. (168 aa)
srsf1bSerine/arginine-rich splicing factor 1B; May play a role in preventing exon skipping, ensuring the accuracy of splicing and regulating alternative splicing. Belongs to the splicing factor SR family. (245 aa)
col1a2Collagen, type I, alpha 2. (1352 aa)
LOC568656Antifreeze protein type IV. (129 aa)
thbs1bThrombospondin 1b. (1171 aa)
tnnt3bTroponin T type 3b (skeletal, fast). (284 aa)
g3bp1GTPase-activating protein (SH3 domain)-binding protein 1. (477 aa)
fkbp7Peptidylprolyl isomerase. (222 aa)
tnnt2aTroponin T type 2a (cardiac). (282 aa)
hao1Hydroxyacid oxidase (glycolate oxidase) 1. (369 aa)
map1lc3cMicrotubule-associated protein 1 light chain 3 gamma. (128 aa)
ldhaL-lactate dehydrogenase A chain; Belongs to the LDH/MDH superfamily. LDH family. (333 aa)
sox32SRY-box transcription factor 32. (307 aa)
ccne1G1/S-specific cyclin-E1; Essential for the control of the cell cycle at the G1/S (start) transition; Belongs to the cyclin family. Cyclin E subfamily. (410 aa)
tnni4b.2Troponin I4b, tandem duplicate 2. (218 aa)
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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