STRINGSTRING
cdh23 cdh23 myo7aa myo7aa LOC100004499 LOC100004499 pcdh15b pcdh15b eps8a eps8a pxdn pxdn pcdh15a pcdh15a kcnma1a kcnma1a ush1c ush1c slc26a4 slc26a4 TMC1 TMC1 slc17a8 slc17a8 tectb tectb acta1b acta1b ctbp2a ctbp2a myo7ab myo7ab slc26a5 slc26a5
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
cdh23Cadherin-related 23. (2883 aa)
myo7aaMyosin VIIAa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (2190 aa)
LOC100004499Stereocilin. (1934 aa)
pcdh15bProtocadherin-related 15b. (1907 aa)
eps8aEpidermal growth factor receptor pathway substrate 8a. (804 aa)
pxdnPeroxidasin. (1460 aa)
pcdh15aProtocadherin-related 15a. (1796 aa)
kcnma1aPotassium large conductance calcium-activated channel, subfamily M, alpha member 1a. (1184 aa)
ush1cUsher syndrome 1C (Autosomal recessive, severe). (548 aa)
slc26a4Pendrin; Sodium-independent transporter of chloride and iodide. Belongs to the SLC26A/SulP transporter (TC 2.A.53) family. (760 aa)
TMC1Transmembrane channel-like protein 1; Probable ion channel required for the normal function of hair cells (By similarity). Component of the hair cell's mechanotransduction (MET) machinery ; Belongs to the TMC family. (990 aa)
slc17a8Vesicular glutamate transporter 3; Mediates the uptake of glutamate into synaptic vesicles at presynaptic nerve terminals of excitatory neural cells; Belongs to the major facilitator superfamily. Sodium/anion cotransporter family. VGLUT subfamily. (590 aa)
tectbZgc:101843 protein. (336 aa)
acta1bActin alpha 1, skeletal muscle b. (377 aa)
ctbp2aC-terminal-binding protein 2a. (710 aa)
myo7abMyosin VIIAb; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (2190 aa)
slc26a5Solute carrier family 26, member 5. (739 aa)
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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