19 items (Danio rerio) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	EGFLAM	EGF like, fibronectin type III and laminin G domains. (986 aa)
	fn1b	Fibronectin 1b. (2500 aa)
	whrna	Whirlin a. (939 aa)
	ush1c	Usher syndrome 1C (Autosomal recessive, severe). (548 aa)
	pola1	DNA polymerase. (1468 aa)
	cdh23-2	Cadherin-related 23. (436 aa)
	whrnb	Whirlin b. (946 aa)
	pde6b	Phosphodiesterase. (854 aa)
	pcdh15b	Protocadherin-related 15b. (1907 aa)
	ush1gb	Usher syndrome 1Gb (autosomal recessive). (488 aa)
	myo7aa	Myosin VIIAa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (2190 aa)
	casp3a	Caspase 3, apoptosis-related cysteine peptidase a; Belongs to the peptidase C14A family. (282 aa)
	adgrv1	Adhesion G-protein coupled receptor V1; Receptor that may have an important role in the development of the sensory nervous system. (6198 aa)
	cdh23	Cadherin-related 23. (2883 aa)
	rmc1	Regulator of MON1-CCZ1. (449 aa)
	pold1	DNA polymerase. (1105 aa)
	ENSDARP00000060652	Si:ch211-57i17.5. (199 aa)
	casp3b	Caspase 3, apoptosis-related cysteine peptidase b; Belongs to the peptidase C14A family. (285 aa)
	ush2a	Usher syndrome 2A (autosomal recessive, mild). (5236 aa)

Your Current Organism:

Danio rerio

NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EGFLAM	ENSDARP00000060652	ENSDARP00000132488	ENSDARP00000060652	EGF like, fibronectin type III and laminin G domains.	Si:ch211-57i17.5.	0.446
EGFLAM	adgrv1	ENSDARP00000132488	ENSDARP00000020853	EGF like, fibronectin type III and laminin G domains.	Adhesion G-protein coupled receptor V1; Receptor that may have an important role in the development of the sensory nervous system.	0.492
EGFLAM	ush1c	ENSDARP00000132488	ENSDARP00000104974	EGF like, fibronectin type III and laminin G domains.	Usher syndrome 1C (Autosomal recessive, severe).	0.506
EGFLAM	whrna	ENSDARP00000132488	ENSDARP00000102025	EGF like, fibronectin type III and laminin G domains.	Whirlin a.	0.568
ENSDARP00000060652	EGFLAM	ENSDARP00000060652	ENSDARP00000132488	Si:ch211-57i17.5.	EGF like, fibronectin type III and laminin G domains.	0.446
ENSDARP00000060652	adgrv1	ENSDARP00000060652	ENSDARP00000020853	Si:ch211-57i17.5.	Adhesion G-protein coupled receptor V1; Receptor that may have an important role in the development of the sensory nervous system.	0.962
ENSDARP00000060652	cdh23	ENSDARP00000060652	ENSDARP00000026525	Si:ch211-57i17.5.	Cadherin-related 23.	0.839
ENSDARP00000060652	cdh23-2	ENSDARP00000060652	ENSDARP00000119218	Si:ch211-57i17.5.	Cadherin-related 23.	0.476
ENSDARP00000060652	fn1b	ENSDARP00000060652	ENSDARP00000094530	Si:ch211-57i17.5.	Fibronectin 1b.	0.505
ENSDARP00000060652	myo7aa	ENSDARP00000060652	ENSDARP00000143601	Si:ch211-57i17.5.	Myosin VIIAa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.835
ENSDARP00000060652	pcdh15b	ENSDARP00000060652	ENSDARP00000141906	Si:ch211-57i17.5.	Protocadherin-related 15b.	0.858
ENSDARP00000060652	rmc1	ENSDARP00000060652	ENSDARP00000050825	Si:ch211-57i17.5.	Regulator of MON1-CCZ1.	0.646
ENSDARP00000060652	ush1c	ENSDARP00000060652	ENSDARP00000104974	Si:ch211-57i17.5.	Usher syndrome 1C (Autosomal recessive, severe).	0.820
ENSDARP00000060652	ush1gb	ENSDARP00000060652	ENSDARP00000156275	Si:ch211-57i17.5.	Usher syndrome 1Gb (autosomal recessive).	0.814
ENSDARP00000060652	whrna	ENSDARP00000060652	ENSDARP00000102025	Si:ch211-57i17.5.	Whirlin a.	0.988
ENSDARP00000060652	whrnb	ENSDARP00000060652	ENSDARP00000119523	Si:ch211-57i17.5.	Whirlin b.	0.982
adgrv1	EGFLAM	ENSDARP00000020853	ENSDARP00000132488	Adhesion G-protein coupled receptor V1; Receptor that may have an important role in the development of the sensory nervous system.	EGF like, fibronectin type III and laminin G domains.	0.492
adgrv1	ENSDARP00000060652	ENSDARP00000020853	ENSDARP00000060652	Adhesion G-protein coupled receptor V1; Receptor that may have an important role in the development of the sensory nervous system.	Si:ch211-57i17.5.	0.962
adgrv1	cdh23	ENSDARP00000020853	ENSDARP00000026525	Adhesion G-protein coupled receptor V1; Receptor that may have an important role in the development of the sensory nervous system.	Cadherin-related 23.	0.933
adgrv1	cdh23-2	ENSDARP00000020853	ENSDARP00000119218	Adhesion G-protein coupled receptor V1; Receptor that may have an important role in the development of the sensory nervous system.	Cadherin-related 23.	0.912

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