STRINGSTRING
tp53 tp53 irf4a irf4a stat1a stat1a stat6 stat6 ifnphi1 ifnphi1 caspa caspa cgas cgas traf6 traf6 nos2b nos2b stat2 stat2 ins ins ido1 ido1 gbp1 gbp1 gbp gbp acta1b acta1b apoeb apoeb lgals3b lgals3b btr01 btr01 irf1a irf1a yap1 yap1 ncf2 ncf2 gbp4 gbp4 src src stat3 stat3 casp8 casp8 il10 il10 lgals3a lgals3a atg4b atg4b nos2a nos2a caspbl caspbl gbp2 gbp2 gbp3 gbp3 stub1 stub1 nek6 nek6 irf9 irf9 nod2 nod2 egfra egfra nlrp1 nlrp1 lgals8a lgals8a itgam itgam nos1 nos1 nfkb1 nfkb1 casp22 casp22 fadd fadd irf1b irf1b hrasa hrasa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
tp53Cellular tumor antigen p53; Acts as a tumor suppressor in many tumor types; induces growth arrest or apoptosis depending on the physiological circumstances and cell type. Involved in cell cycle regulation as a trans-activator that acts to negatively regulate cell division by controlling a set of genes required for this process. One of the activated genes is an inhibitor of cyclin-dependent kinases. Apoptosis induction seems to be mediated either by stimulation of bax and fas antigen expression, or by repression of Bcl-2 expression. (369 aa)
irf4aInterferon regulatory factor 4a. (460 aa)
stat1aSignal transducer and activator of transcription. (749 aa)
stat6Signal transducer and activator of transcription. (758 aa)
ifnphi1Interferon phi 1. (185 aa)
caspaCaspase a subunit p10; Thiol protease which cleaves IL-1 beta (il1b), releasing the mature cytokine which is involved in a variety of inflammatory processes, and mediates apoptosis. Component of the NLRP1 inflammasome, which plays a crucial role in innate immunity and inflammation. In response to pathogens and other damage-associated signals, recruited to the NLRP1 inflammasome in its precursor form. Its subsequent activation causes the cleavage of pro-il1b into the midformed il1b, which then evetually leads to il1b maturation and secretion in the extracellular milieu. Required for the [...] (383 aa)
cgasCyclic GMP-AMP synthase. (592 aa)
traf6TNF receptor-associated factor 6; E3 ubiquitin-protein ligase that mediates ubiquitination of proteins. Adapter protein that seems to play a role in signal transduction. (542 aa)
nos2bNitric oxide synthase; Produces nitric oxide (NO). (1077 aa)
stat2Signal transducer and activator of transcription. (836 aa)
insInsulin A chain; Insulin decreases blood glucose concentration. It increases cell permeability to monosaccharides, amino acids and fatty acids. It accelerates glycolysis, the pentose phosphate cycle, and glycogen synthesis in liver. (108 aa)
ido1Indoleamine 2,3-dioxygenase 1. (435 aa)
gbp1Guanylate-binding protein 1. (621 aa)
gbpGlycogen synthase kinase-binding protein. (149 aa)
acta1bActin alpha 1, skeletal muscle b. (377 aa)
apoebApolipoprotein Eb; APOE is an apolipoprotein, a protein associating with lipid particles, that mainly functions in lipoprotein-mediated lipid transport between organs via the plasma and interstitial fluids. APOE is a core component of plasma lipoproteins and is involved in their production, conversion and clearance. Apoliproteins are amphipathic molecules that interact both with lipids of the lipoprotein particle core and the aqueous environment of the plasma. Belongs to the apolipoprotein A1/A4/E family. (281 aa)
lgals3bGalectin. (252 aa)
btr01Bloodthirsty-related gene family, member 1. (582 aa)
irf1aInterferon regulatory factor. (251 aa)
yap1Transcriptional coactivator YAP1; Transcriptional regulator which can act both as a coactivator and a corepressor and is the critical downstream regulatory target in the Hippo signaling pathway that plays a pivotal role in organ size control and tumor suppression by restricting proliferation and promoting apoptosis (By similarity). Required for expansion of the neural plate and neural plate border zone progenitor pools. Acts as a direct regulator of pax3 expression via interaction with tead1. Plays a key role in tissue tension and 3D tissue shape by regulating cortical actomyosin netwo [...] (442 aa)
ncf2Neutrophil cytosolic factor 2. (500 aa)
gbp4Guanylate-binding protein 4. (618 aa)
srcProto-oncogene tyrosine-protein kinase Src; Non-receptor protein tyrosine kinase which is activated following engagement of many different classes of cellular receptors including immune response receptors, integrins and other adhesion receptors, receptor protein tyrosine kinases, G protein-coupled receptors as well as cytokine receptors. Participates in signaling pathways that control a diverse spectrum of biological activities including gene transcription, immune response, cell adhesion, cell cycle progression, apoptosis, migration, and transformation. Due to functional redundancy bet [...] (534 aa)
stat3Signal transducer and activator of transcription. (806 aa)
casp8Caspase 8, apoptosis-related cysteine peptidase; Belongs to the peptidase C14A family. (476 aa)
il10Interleukin-10. (180 aa)
lgals3aGalectin. (332 aa)
atg4bCysteine protease ATG4B; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy. Cleaves the C-terminal amino acid of ATG8 family proteins to reveal a C-terminal glycine. Exposure of the glycine at the C-terminus is essential for ATG8 proteins conjugation to phosphatidylethanolamine (PE). Has also an activity of delipidating enzyme for the PE-conjugated forms (By similarity); Belongs to the peptidase C54 family. (394 aa)
nos2aNitric oxide synthase; Produces nitric oxide (NO). (1079 aa)
caspblCaspase b,-like; Belongs to the peptidase C14A family. (409 aa)
gbp2Guanylate-binding protein 2. (627 aa)
gbp3Guanylate-binding protein 3. (965 aa)
stub1STIP1 homology and U-Box-containing protein 1. (287 aa)
nek6NIMA-related kinase 6; Belongs to the protein kinase superfamily. (270 aa)
irf9Interferon regulatory factor 9. (428 aa)
nod2Nucleotide-binding oligomerization domain-containing 2. (980 aa)
egfraEpidermal growth factor receptor precursor. (625 aa)
nlrp1NACHT, LRR and PYD domains-containing protein 1 homolog; As the sensor component of the NLRP1 inflammasome, plays a crucial role in innate immunity and inflammation. In response to pathogens and other damage-associated signals, initiates the formation of the inflammasome polymeric complex, which activates caspases caspa and caspb leading to processing and secretion of proinflammatory cytokines. Required for the sequential recruitment of pro-caspa and pro-caspb to the inflammasome, which promotes activation of the caspases and the caspa/b-catalyzed il1b maturation and secretion in the e [...] (1192 aa)
lgals8aGalectin. (316 aa)
itgamIntegrin, alpha M (complement component 3 receptor 3 subunit); Belongs to the integrin alpha chain family. (780 aa)
nos1Nitric oxide synthase; Produces nitric oxide (NO). (1431 aa)
nfkb1Nuclear factor of kappa light polypeptide gene enhancer in B-cells 1. (540 aa)
casp22Caspase 22, apoptosis-related cysteine peptidase; Belongs to the peptidase C14A family. (376 aa)
faddFas (tnfrsf6)-associated via death domain. (192 aa)
irf1bInterferon regulatory factor. (287 aa)
hrasaHRas proto-oncogene, GTPase a. (189 aa)
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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