STRINGSTRING
prkacab prkacab ppl ppl prkacaa prkacaa scinla scinla nmt2 nmt2 prx prx casp2 casp2 nmt1a nmt1a synm synm prkacbb prkacbb scinlb scinlb ezrb ezrb acta1b acta1b mipa mipa gsnb gsnb scin scin gsna gsna prkacba prkacba
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
prkacabProtein kinase, cAMP-dependent, catalytic, alpha, genome duplicate b; Belongs to the protein kinase superfamily. (351 aa)
pplPeriplakin. (1754 aa)
prkacaaProtein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a; Belongs to the protein kinase superfamily. (352 aa)
scinlaScinderin-like a. (720 aa)
nmt2Glycylpeptide N-tetradecanoyltransferase 2; Adds a myristoyl group to the N-terminal glycine residue of certain cellular and viral proteins. (493 aa)
prxPeriaxin. (4197 aa)
casp2Caspase 2, apoptosis-related cysteine peptidase; Belongs to the peptidase C14A family. (399 aa)
nmt1aGlycylpeptide N-tetradecanoyltransferase; Adds a myristoyl group to the N-terminal glycine residue of certain cellular proteins; Belongs to the NMT family. (505 aa)
synmSynemin, intermediate filament protein; Belongs to the intermediate filament family. (1073 aa)
prkacbbProtein kinase, cAMP-dependent, catalytic, beta b; Belongs to the protein kinase superfamily. (351 aa)
scinlbScinderin-like b. (720 aa)
ezrbEzrin b. (583 aa)
acta1bActin alpha 1, skeletal muscle b. (377 aa)
mipaMajor intrinsic protein of lens fiber 1; Belongs to the MIP/aquaporin (TC 1.A.8) family. (263 aa)
gsnbGelsolin b. (728 aa)
scinScinderin. (733 aa)
gsnaGelsolin a. (729 aa)
prkacbaProtein kinase, cAMP-dependent, catalytic, beta a; Belongs to the protein kinase superfamily. (395 aa)
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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