STRINGSTRING
ift81 ift81 magi2a magi2a adgrv1 adgrv1 myo7ab myo7ab cdh23 cdh23 ift74 ift74 ift88 ift88 ift172 ift172 ENSDARP00000060652 ENSDARP00000060652 ift52 ift52 ush2a ush2a rhol rhol whrna whrna ush1c ush1c ift140 ift140 whrnb whrnb opn6b opn6b DST DST pcdh15a pcdh15a ush1gb ush1gb ift20 ift20 myo7aa myo7aa pcdh15b pcdh15b clrn1 clrn1 pdzd7a pdzd7a Exorh Exorh cib2 cib2 opn1mw3 opn1mw3 opn1mw1 opn1mw1 opn1mw4 opn1mw4 rho rho opn1mw2 opn1mw2 ift57 ift57 cetn3 cetn3
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ift81Intraflagellar transport 81 homolog. (675 aa)
magi2aMembrane-associated guanylate kinase, WW and PDZ domain-containing 2a. (1503 aa)
adgrv1Adhesion G-protein coupled receptor V1; Receptor that may have an important role in the development of the sensory nervous system. (6198 aa)
myo7abMyosin VIIAb; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (2190 aa)
cdh23Cadherin-related 23. (2883 aa)
ift74Intraflagellar transport 74. (583 aa)
ift88Intraflagellar transport 88 homolog. (824 aa)
ift172Intraflagellar transport protein 172 homolog; Required for the maintenance and formation of cilia. (1745 aa)
ENSDARP00000060652Si:ch211-57i17.5. (199 aa)
ift52Intraflagellar transport 52 homolog (Chlamydomonas). (435 aa)
ush2aUsher syndrome 2A (autosomal recessive, mild). (5236 aa)
rholRhodopsin. (355 aa)
whrnaWhirlin a. (939 aa)
ush1cUsher syndrome 1C (Autosomal recessive, severe). (548 aa)
ift140Intraflagellar transport 140 homolog (Chlamydomonas). (1445 aa)
whrnbWhirlin b. (946 aa)
opn6bOpsin 6, group member b; Belongs to the G-protein coupled receptor 1 family. Opsin subfamily. (391 aa)
DSTDystonin. (3849 aa)
pcdh15aProtocadherin-related 15a. (1796 aa)
ush1gbUsher syndrome 1Gb (autosomal recessive). (488 aa)
ift20Intraflagellar transport protein 20 homolog; Involved in ciliary process assembly. May play a role in the trafficking of ciliary membrane proteins from the Golgi complex to the cilium. Regulates the platelet-derived growth factor receptor-alpha (PDGFRA) signaling pathway. Plays an important role in spermatogenesis, particularly spermiogenesis, when germ cells form flagella. (132 aa)
myo7aaMyosin VIIAa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (2190 aa)
pcdh15bProtocadherin-related 15b. (1907 aa)
clrn1Clrn1 protein. (232 aa)
pdzd7aPDZ domain-containing 7a. (954 aa)
ExorhRhodopsin. (168 aa)
cib2Calcium and integrin-binding family member 2. (187 aa)
opn1mw3Green-sensitive opsin-3; Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to cis-retinal; Belongs to the G-protein coupled receptor 1 family. Opsin subfamily. (349 aa)
opn1mw1Green-sensitive opsin-1; Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to cis-retinal. (349 aa)
opn1mw4Green-sensitive opsin-4; Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to cis-retinal. (349 aa)
rhoRhodopsin; Photoreceptor required for image-forming vision at low light intensity. While most salt water fish species use retinal as chromophore, most freshwater fish use 3-dehydroretinal, or a mixture of retinal and 3-dehydroretinal (By similarity). Light-induced isomerization of 11-cis to all-trans retinal triggers a conformational change that activates signaling via G-proteins. Subsequent receptor phosphorylation mediates displacement of the bound G-protein alpha subunit by arrestin and terminates signaling (By similarity). (354 aa)
opn1mw2Green-sensitive opsin-2; Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to cis-retinal; Belongs to the G-protein coupled receptor 1 family. Opsin subfamily. (349 aa)
ift57Intraflagellar transport protein 57 homolog; Required for the formation of cilia. Essential for differentiation and survival of sensory neurons. May also have pro- apoptotic function. (407 aa)
cetn3Centrin 3. (167 aa)
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.