STRINGSTRING
psmb1 psmb1 col11a1a col11a1a dmd dmd col1a1a col1a1a psma5 psma5 scube1 scube1 psma1 psma1 col11a2 col11a2 tgfb1b tgfb1b tbx16l tbx16l tgfbr1a tgfbr1a tgfb5 tgfb5 col2a1a col2a1a egf egf tgfb1a tgfb1a tpi1b tpi1b galca galca tgfbr2b tgfbr2b cdh7a cdh7a tpi1a tpi1a tgfb3 tgfb3 scube3 scube3 col5a3a col5a3a tbx6 tbx6
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
psmb1Proteasome subunit beta. (237 aa)
col11a1aCollagen, type XI, alpha 1a. (1813 aa)
dmdDystrophin. (594 aa)
col1a1aCollagen, type I, alpha 1a. (1447 aa)
psma5Proteasome subunit alpha type. (241 aa)
scube1Signal peptide, CUB domain, EGF-like 1. (1067 aa)
psma1Proteasome subunit alpha type. (262 aa)
col11a2Collagen, type XI, alpha 2. (1803 aa)
tgfb1bTransforming growth factor beta; Belongs to the TGF-beta family. (379 aa)
tbx16lT-box transcription factor TBX6L; Probable transcriptional regulator involved in developmental processes. (488 aa)
tgfbr1aReceptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. (500 aa)
tgfb5Transforming growth factor beta; Belongs to the TGF-beta family. (414 aa)
col2a1aCollagen, type II, alpha 1a. (1491 aa)
egfEpidermal growth factor. (1114 aa)
tgfb1aTransforming growth factor beta; Belongs to the TGF-beta family. (377 aa)
tpi1bTriosephosphate isomerase B; Triosephosphate isomerase is an extremely efficient metabolic enzyme that catalyzes the interconversion between dihydroxyacetone phosphate (DHAP) and D-glyceraldehyde-3-phosphate (G3P) in glycolysis and gluconeogenesis. (248 aa)
galcaGalactocerebrosidase; Hydrolyzes the galactose ester bonds of galactosylceramide, galactosylsphingosine, lactosylceramide, and monogalactosyldiglyceride. (660 aa)
tgfbr2bTGF-beta receptor type-2; Transmembrane serine/threonine kinase forming with the TGF- beta type I serine/threonine kinase receptor, TGFBR1, the non- promiscuous receptor for the TGF-beta cytokines TGFB1, TGFB2 and TGFB3. Transduces the TGFB1, TGFB2 and TGFB3 signal from the cell surface to the cytoplasm and is thus regulating a plethora of physiological and pathological processes including cell cycle arrest in epithelial and hematopoietic cells, control of mesenchymal cell proliferation and differentiation, wound healing, extracellular matrix production, immunosuppression and carcinoge [...] (556 aa)
cdh7aCdh7 protein; Cadherins are calcium-dependent cell adhesion proteins. (787 aa)
tpi1aTriosephosphate isomerase A; Triosephosphate isomerase is an extremely efficient metabolic enzyme that catalyzes the interconversion between dihydroxyacetone phosphate (DHAP) and D-glyceraldehyde-3-phosphate (G3P) in glycolysis and gluconeogenesis. (248 aa)
tgfb3Transforming growth factor beta; Belongs to the TGF-beta family. (410 aa)
scube3Signal peptide, CUB domain, EGF-like 3. (1002 aa)
col5a3aCollagen, type V, alpha 3a. (1887 aa)
tbx6T-box transcription factor TBX6; T-box transcription factor involved in the development of paraxial mesoderm. (874 aa)
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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