14 items (Danio rerio) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cdh23	Cadherin-related 23. (2883 aa)
	adgrv1	Adhesion G-protein coupled receptor V1; Receptor that may have an important role in the development of the sensory nervous system. (6198 aa)
	acta1b	Actin alpha 1, skeletal muscle b. (377 aa)
	nck2b	Cytoplasmic protein. (380 aa)
	rpgra	Retinitis pigmentosa GTPase regulator a. (1698 aa)
	ush2a	Usher syndrome 2A (autosomal recessive, mild). (5236 aa)
	nck2a	Cytoplasmic protein. (403 aa)
	ush1c	Usher syndrome 1C (Autosomal recessive, severe). (548 aa)
	cdh23-2	Cadherin-related 23. (436 aa)
	nck1b	Cytoplasmic protein. (381 aa)
	cib2	Calcium and integrin-binding family member 2. (187 aa)
	pcare1	Uncharacterized protein. (1122 aa)
	arsg	Arylsulfatase G. (526 aa)
	myo7aa	Myosin VIIAa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (2190 aa)

Your Current Organism:

Danio rerio

NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
acta1b	cdh23	ENSDARP00000058628	ENSDARP00000026525	Actin alpha 1, skeletal muscle b.	Cadherin-related 23.	0.687
acta1b	cib2	ENSDARP00000058628	ENSDARP00000130315	Actin alpha 1, skeletal muscle b.	Calcium and integrin-binding family member 2.	0.440
acta1b	myo7aa	ENSDARP00000058628	ENSDARP00000143601	Actin alpha 1, skeletal muscle b.	Myosin VIIAa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.919
acta1b	nck1b	ENSDARP00000058628	ENSDARP00000121375	Actin alpha 1, skeletal muscle b.	Cytoplasmic protein.	0.799
acta1b	nck2a	ENSDARP00000058628	ENSDARP00000093447	Actin alpha 1, skeletal muscle b.	Cytoplasmic protein.	0.775
acta1b	nck2b	ENSDARP00000058628	ENSDARP00000063647	Actin alpha 1, skeletal muscle b.	Cytoplasmic protein.	0.774
acta1b	ush1c	ENSDARP00000058628	ENSDARP00000104974	Actin alpha 1, skeletal muscle b.	Usher syndrome 1C (Autosomal recessive, severe).	0.596
acta1b	ush2a	ENSDARP00000058628	ENSDARP00000080636	Actin alpha 1, skeletal muscle b.	Usher syndrome 2A (autosomal recessive, mild).	0.417
adgrv1	arsg	ENSDARP00000020853	ENSDARP00000137037	Adhesion G-protein coupled receptor V1; Receptor that may have an important role in the development of the sensory nervous system.	Arylsulfatase G.	0.480
adgrv1	cdh23	ENSDARP00000020853	ENSDARP00000026525	Adhesion G-protein coupled receptor V1; Receptor that may have an important role in the development of the sensory nervous system.	Cadherin-related 23.	0.933
adgrv1	cdh23-2	ENSDARP00000020853	ENSDARP00000119218	Adhesion G-protein coupled receptor V1; Receptor that may have an important role in the development of the sensory nervous system.	Cadherin-related 23.	0.912
adgrv1	cib2	ENSDARP00000020853	ENSDARP00000130315	Adhesion G-protein coupled receptor V1; Receptor that may have an important role in the development of the sensory nervous system.	Calcium and integrin-binding family member 2.	0.864
adgrv1	myo7aa	ENSDARP00000020853	ENSDARP00000143601	Adhesion G-protein coupled receptor V1; Receptor that may have an important role in the development of the sensory nervous system.	Myosin VIIAa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.873
adgrv1	ush1c	ENSDARP00000020853	ENSDARP00000104974	Adhesion G-protein coupled receptor V1; Receptor that may have an important role in the development of the sensory nervous system.	Usher syndrome 1C (Autosomal recessive, severe).	0.971
adgrv1	ush2a	ENSDARP00000020853	ENSDARP00000080636	Adhesion G-protein coupled receptor V1; Receptor that may have an important role in the development of the sensory nervous system.	Usher syndrome 2A (autosomal recessive, mild).	0.991
arsg	adgrv1	ENSDARP00000137037	ENSDARP00000020853	Arylsulfatase G.	Adhesion G-protein coupled receptor V1; Receptor that may have an important role in the development of the sensory nervous system.	0.480
arsg	cdh23-2	ENSDARP00000137037	ENSDARP00000119218	Arylsulfatase G.	Cadherin-related 23.	0.472
arsg	cib2	ENSDARP00000137037	ENSDARP00000130315	Arylsulfatase G.	Calcium and integrin-binding family member 2.	0.649
arsg	ush1c	ENSDARP00000137037	ENSDARP00000104974	Arylsulfatase G.	Usher syndrome 1C (Autosomal recessive, severe).	0.502
arsg	ush2a	ENSDARP00000137037	ENSDARP00000080636	Arylsulfatase G.	Usher syndrome 2A (autosomal recessive, mild).	0.621

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