STRINGSTRING
her5 her5 dvl2 dvl2 fabp2 fabp2 rab7a rab7a hand2 hand2 eif3m eif3m tgfb3 tgfb3 cldn15la cldn15la wt1a wt1a hsp70l hsp70l elavl3 elavl3 rab5aa rab5aa rab5c rab5c admp admp myl7 myl7 h2ax h2ax cdh17 cdh17 fosab fosab mpx mpx chrd chrd kdr kdr ins ins gabarapa gabarapa mnx1 mnx1 tek tek hist2h2l hist2h2l fabp10a fabp10a nkx2.3 nkx2.3 olig2 olig2 dharma dharma rab11a rab11a tgfb1a tgfb1a foxp2 foxp2 rab11ba rab11ba dkk1b dkk1b cox6b1 cox6b1 rag2 rag2 bmp4 bmp4 mylpfa mylpfa aldh1a2 aldh1a2 cryaa cryaa myb myb fli1a fli1a id2a id2a mpeg1.1 mpeg1.1 enpep enpep aoc1 aoc1 h3f3a-2 h3f3a-2 wnt11 wnt11 col2a1a col2a1a hbba1 hbba1 elk4 elk4 dusp6 dusp6 wnt4 wnt4 tgfb5 tgfb5 sox10 sox10 rabif rabif wnt9a wnt9a hbbe1.2 hbbe1.2 smad2 smad2 bmp2b bmp2b hsp70.1 hsp70.1 sp7 sp7 rab11bb rab11bb ddx4 ddx4 slc6a3 slc6a3 runx1 runx1 insb insb mybl2a mybl2a lmo2 lmo2 wnt8a wnt8a eef1a1b eef1a1b cox8a cox8a wnt8-2 wnt8-2 nphs2 nphs2 rag1 rag1 gata2b gata2b piwil1 piwil1 tgfb1b tgfb1b actb2 actb2 X1WHF1_DANRE X1WHF1_DANRE RIC1 RIC1 alcama alcama gsdf gsdf eef1a1l1 eef1a1l1 bmp16 bmp16 cox6b2 cox6b2 b4galt1 b4galt1 ctnnb1 ctnnb1 notch1a notch1a sox17 sox17 kdrl kdrl map1lc3b map1lc3b phox2bb phox2bb gata1a gata1a sox9a sox9a pou4f1 pou4f1 hsp70.3 hsp70.3 rab5ab rab5ab ptf1a ptf1a bmp2a bmp2a fgfr1a fgfr1a ela3l ela3l bmp7a bmp7a fgf8a fgf8a lhx1a lhx1a
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
her5Hairy-related 5. (214 aa)
dvl2Dishevelled segment polarity protein 2. (747 aa)
fabp2Fatty acid-binding protein 2, intestinal; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family. (132 aa)
rab7aRAB7a, member RAS oncogene family. (207 aa)
hand2Heart- and neural crest derivatives-expressed protein 2; Essential for myocardial and pectoral fin differentiation, patterning and morphogenesis. (205 aa)
eif3mEukaryotic translation initiation factor 3 subunit M; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (375 aa)
tgfb3Transforming growth factor beta; Belongs to the TGF-beta family. (410 aa)
cldn15laClaudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family. (219 aa)
wt1aWT1 transcription factor a. (419 aa)
hsp70lNovel protein similar to heat shock cognate 70-kd protein; Belongs to the heat shock protein 70 family. (643 aa)
elavl3ELAV-like protein; Belongs to the RRM elav family. (359 aa)
rab5aaRAB5A, member RAS oncogene family, a. (216 aa)
rab5cRAB5C, member RAS oncogene family. (221 aa)
admpAnti-dorsalizing morphogenic protein. (391 aa)
myl7Myosin, light polypeptide 7, regulatory. (172 aa)
h2axHistone H2AX; Variant histone H2A which replaces conventional H2A in a subset of nucleosomes. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post- translational modifications of histones, also called histone code, and nucleosome remodeling. Required for checkpoint-mediated arrest of cell cycle progression in response to low dos [...] (142 aa)
cdh17Cadherin 17, LI cadherin (liver-intestine). (868 aa)
fosabV-fos FBJ murine osteosarcoma viral oncogene homolog Ab. (349 aa)
mpxMyeloid-specific peroxidase. (893 aa)
chrdChordin; Dorsalizing factor. Key developmental protein that dorsalizes early vertebrate embryonic tissues by binding to ventralizing TGF-beta family bone morphogenetic proteins (BMPs) and sequestering them in latent complexes (By similarity); Belongs to the chordin family. (940 aa)
kdrVascular endothelial growth factor receptor 2; Receptor for VEGF or VEGFC. Has a tyrosine-protein kinase activity. Combinations of multiple VEGF receptors are required for development of different blood vessel types in the embryo. Involved in angiogenesis, specifically in VEGF-induced sprouting of new blood vessels. Particularly involved in artery formation. Does not appear to be required for hematopoiesis. (1357 aa)
insInsulin A chain; Insulin decreases blood glucose concentration. It increases cell permeability to monosaccharides, amino acids and fatty acids. It accelerates glycolysis, the pentose phosphate cycle, and glycogen synthesis in liver. (108 aa)
gabarapaGABA(A) receptor-associated protein a. (122 aa)
mnx1Motor neuron and pancreas homeobox 1. (311 aa)
tekTyrosine-protein kinase receptor Tie-2; Tyrosine-protein kinase that acts as cell-surface receptor for angiopoietins and regulates angiogenesis, endothelial cell survival, proliferation, migration, adhesion and cell spreading, reorganization of the actin cytoskeleton, but also maintenance of vascular quiescence. Can activate or inhibit angiogenesis, depending on the context. Angiopoietin signaling triggers receptor dimerization and autophosphorylation at specific tyrosine residues that then serve as binding sites for scaffold proteins and effectors (By similarity). (1116 aa)
hist2h2lHistone H2B 3; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (126 aa)
fabp10aFatty acid-binding protein 10-A, liver basic; Binds hydrophobic ligands, such as cholate, in the cytoplasm. May be involved in intracellular lipid transport (By similarity). Binds one cholate per subunit. (126 aa)
nkx2.3NK2 transcription factor related 3. (321 aa)
olig2Oligodendrocyte lineage transcription factor 2. (273 aa)
dharmaDharma. (192 aa)
rab11aNovel protein similar to vertebrate Ras family. (215 aa)
tgfb1aTransforming growth factor beta; Belongs to the TGF-beta family. (377 aa)
foxp2Forkhead box P2. (697 aa)
rab11baRAB11B, member RAS oncogene family, a. (218 aa)
dkk1bDickkopf WNT-signaling pathway inhibitor 1b. (241 aa)
cox6b1Cytochrome c oxidase subunit; This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport. (86 aa)
rag2V(D)J recombination-activating protein 2; Core component of the RAG complex, a multiprotein complex that mediates the DNA cleavage phase during V(D)J recombination. V(D)J recombination assembles a diverse repertoire of immunoglobulin and T- cell receptor genes in developing B and T lymphocytes through rearrangement of different V (variable), in some cases D (diversity), and J (joining) gene segments. DNA cleavage by the RAG complex occurs in 2 steps: a first nick is introduced in the top strand immediately upstream of the heptamer, generating a 3'-hydroxyl group that can attack the pho [...] (530 aa)
bmp4Bone morphogenetic protein 4. (400 aa)
mylpfaMyosin light chain, phosphorylatable, fast skeletal muscle a. (169 aa)
aldh1a2Aldehyde dehydrogenase 1 family, member A2; Belongs to the aldehyde dehydrogenase family. (518 aa)
cryaaCrystallin, alpha A; Belongs to the small heat shock protein (HSP20) family. (173 aa)
mybV-myb avian myeloblastosis viral oncogene homolog. (641 aa)
fli1aFli-1 proto-oncogene, ETS transcription factor a. (451 aa)
id2aInhibitor of DNA binding 2, dominant negative helix-loop-helix protein, a. (137 aa)
mpeg1.1Macrophage-expressed 1, tandem duplicate 1. (718 aa)
enpepAminopeptidase. (951 aa)
aoc1Amine oxidase. (742 aa)
h3f3a-2Histone H3.3; Variant histone H3 which replaces conventional H3 in a wide range of nucleosomes in active genes. Constitutes the predominant form of histone H3 in non-dividing cells and is incorporated into chromatin independently of DNA synthesis. Deposited at sites of nucleosomal displacement throughout transcribed genes, suggesting that it represents an epigenetic imprint of transcriptionally active chromatin. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in [...] (136 aa)
wnt11Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (352 aa)
col2a1aCollagen, type II, alpha 1a. (1491 aa)
hbba1Hemoglobin subunit beta-1; Involved in oxygen transport from gills to the various peripheral tissues; Belongs to the globin family. (148 aa)
elk4ETS transcription factor ELK4. (443 aa)
dusp6Dual specificity protein phosphatase; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily. (382 aa)
wnt4Protein Wnt-4a; Ligand for members of the frizzled family of seven transmembrane receptors (Probable). Plays an important role in embryonic development. (352 aa)
tgfb5Transforming growth factor beta; Belongs to the TGF-beta family. (414 aa)
sox10HMG-box transcription factor Sox10. (485 aa)
rabifRAB-interacting factor. (132 aa)
wnt9aProtein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (363 aa)
hbbe1.2Hemoglobin beta embryonic-1.2. (147 aa)
smad2Mothers against decapentaplegic homolog 2; Promotes differentiation of dorsal tissues. May be involved in the mediation of Ndr2 signaling during mesoderm and axis formation during embryogenesis. (469 aa)
bmp2bBone morphogenetic protein 2b. (411 aa)
hsp70.1Heat shock cognate 70-kd protein, tandem duplicate 1; Belongs to the heat shock protein 70 family. (643 aa)
sp7Sp7 transcription factor. (528 aa)
rab11bbRAB11B, member RAS oncogene family, b. (218 aa)
ddx4DEAD (Asp-Glu-Ala-Asp) box polypeptide 4; Belongs to the DEAD box helicase family. (716 aa)
slc6a3Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family. (629 aa)
runx1Runt-related transcription factor. (451 aa)
insbInsulin; Insulin decreases blood glucose concentration. It increases cell permeability to monosaccharides, amino acids and fatty acids. It accelerates glycolysis, the pentose phosphate cycle, and glycogen synthesis in liver. (159 aa)
mybl2aV-myb avian myeloblastosis viral oncogene homolog-like 2a. (802 aa)
lmo2Rhombotin-2; Transcription factor that acts synergistically with tal1/scl in primitive and definitive hematopoiesis, and in endothelial development. Specifies mesodermal precursors to a hemangioblast cell fate. Hemangioblasts are bipotential precursors of blood and endothelium, and in the absence of hematopoietic induction cues such as gata1, tal1/scl-lmo2-induced haemangioblasts differentiate into endothelial cells. (159 aa)
wnt8aProtein Wnt-8a; Ligand for members of the frizzled family of seven transmembrane receptors. Plays a role in embryonic patterning. May be involved in the specification of the spatial patterns of expression of Gsc and other regulatory genes leading to the establishment of the embryonic axis; Belongs to the Wnt family. (387 aa)
eef1a1bElongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (462 aa)
cox8aCytochrome c oxidase subunit 8A. (76 aa)
wnt8-2Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (353 aa)
nphs2NPHS2 stomatin family member, podocin. (406 aa)
rag1V(D)J recombination-activating protein 1; Catalytic component of the RAG complex, a multiprotein complex that mediates the DNA cleavage phase during V(D)J recombination. V(D)J recombination assembles a diverse repertoire of immunoglobulin and T-cell receptor genes in developing B and T lymphocytes through rearrangement of different V (variable), in some cases D (diversity), and J (joining) gene segments. In the RAG complex, RAG1 mediates the DNA-binding to the conserved recombination signal sequences (RSS) and catalyzes the DNA cleavage activities by introducing a double-strand break b [...] (1057 aa)
gata2bGATA-binding protein 2b. (428 aa)
piwil1Piwi-like protein 1; Plays a central role during gametogenesis by repressing transposable elements and preventing their mobilization, which is essential for the germline integrity. Acts via the piRNA metabolic process, which mediates the repression of transposable elements during meiosis by forming complexes composed of piRNAs and Piwi proteins and governs the methylation and subsequent repression of transposons. Directly binds methylated piRNAs, a class of 24 to 30 nucleotide RNAs that are generated by a Dicer- independent mechanism and are primarily derived from transposons and other [...] (858 aa)
tgfb1bTransforming growth factor beta; Belongs to the TGF-beta family. (379 aa)
actb2Actin, cytoplasmic 2, N-terminally processed; Actin is a highly conserved protein that polymerizes to produce filaments that form cross-linked networks in the cytoplasm of cells. Actin exists in both monomeric (G-actin) and polymeric (F-actin) forms, both forms playing key functions, such as cell motility and contraction. In addition to their role in the cytoplasmic cytoskeleton, G- and F-actin also localize in the nucleus, and regulate gene transcription and motility and repair of damaged DNA. (375 aa)
X1WHF1_DANREHistone H2B; Belongs to the histone H2B family. (124 aa)
RIC1RIC1 homolog, RAB6A GEF complex partner 1. (1321 aa)
alcamaCD166 antigen homolog A; Cell adhesion molecule that mediates both heterotypic cell- cell contacts via its interaction with CD6, as well as homotypic cell- cell contacts. Promotes T-cell activation and proliferation via its interactions with CD6 (By similarity). Contributes to the formation and maturation of the immunological synapse via its interactions with CD6 (By similarity). Mediates homotypic interactions with cells that express ALCAM. Mediates attachment of dendritic cells onto endothelial cells via homotypic interaction. Inhibits endothelial cell migration and promotes endothel [...] (564 aa)
gsdfGonadal soma derived factor variant 1. (172 aa)
eef1a1l1Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-Tu/EF-1A subfamily. (462 aa)
bmp16Bone morphogenetic protein 16. (416 aa)
cox6b2Cytochrome c oxidase subunit; This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport. (86 aa)
b4galt1UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1. (286 aa)
ctnnb1Catenin beta-1; Key downstream component of the canonical Wnt signaling pathway (By similarity). In the absence of Wnt, forms a complex with axin1, axin2, apc, csnk1a1 and gsk3b that promotes phosphorylation on N-terminal Ser and Thr residues and ubiquitination of ctnnb1 and its subsequent degradation by the proteasome (By similarity). In the presence of Wnt ligand, ctnnb1 is not ubiquitinated and accumulates in the nucleus, where it acts as a coactivator for transcription factors of the TCF/LEF family, leading to activate Wnt responsive genes (By similarity). Plays a key role in dorso [...] (789 aa)
notch1aNeurogenic locus notch homolog protein 1; Functions as a receptor for membrane-bound ligands Jagged-1 (JAG1), Jagged-2 (JAG2) and Delta-1 (DLL1) to regulate cell-fate determination. Upon ligand activation through the released notch intracellular domain (NICD) it forms a transcriptional activator complex with RBPJ/RBPSUH and activates genes of the enhancer of split locus. Affects the implementation of differentiation, proliferation and apoptotic programs. Involved in angiogenesis; negatively regulates endothelial cell proliferation and migration and angiogenic sprouting. Involved in the [...] (2438 aa)
sox17SRY-box transcription factor 17. (413 aa)
kdrlVascular endothelial growth factor receptor kdr-like; Receptor for VEGF or VEGFC. Has a tyrosine-protein kinase activity. Combinations of multiple VEGF receptors are required for development of different blood vessel types in the embryo. Involved in angiogenesis, specifically in VEGF-induced sprouting of new blood vessels. Particularly involved in artery formation. Does not appear to be required for hematopoiesis. (1301 aa)
map1lc3bMicrotubule-associated protein 1 light chain 3 beta. (122 aa)
phox2bbPaired-like homeobox 2Bb. (284 aa)
gata1aGATA-binding protein 1a. (418 aa)
sox9aHMG box transcription factor Sox9a. (462 aa)
pou4f1POU domain protein. (368 aa)
hsp70.3Heat shock cognate 70-kd protein, tandem duplicate 3; Belongs to the heat shock protein 70 family. (643 aa)
rab5abRAB5A, member RAS oncogene family like. (216 aa)
ptf1aPancreas transcription factor 1 subunit alpha; Transcription factor implicated in the cell fate determination in various organs. Binds to the E-box consensus sequence 5'-CANNTG-3'. Required for exocrine pancreatic development. Plays a central role in directing the differentiation of retinal progenitors towards horizontal and amacrine fates. (265 aa)
bmp2aBone morphogenetic protein 2a. (386 aa)
fgfr1aFibroblast growth factor receptor 1-A; Tyrosine-protein kinase that acts as cell-surface receptor for fibroblast growth factors and plays an essential role in the regulation of embryonic development, cell proliferation, differentiation and migration. Required for normal mesoderm patterning and normal skeletogenesis. Phosphorylates PLCG1, FRS2, GAB1 and SHB. Ligand binding leads to the activation of several signaling cascades. Activation of PLCG1 leads to the production of the cellular signaling molecules diacylglycerol and inositol-1,4,5-trisphosphate. Phosphorylation of FRS2 triggers [...] (809 aa)
ela3lElastase 3-like; Belongs to the peptidase S1 family. (269 aa)
bmp7aBone morphogenetic protein 7a. (432 aa)
fgf8aFibroblast growth factor 8; Plays an important role in the regulation of embryonic development, cell proliferation, cell differentiation and cell migration (By similarity). Required for Kupffer's vesicle ciliogenesis. (210 aa)
lhx1aLIM/homeobox protein Lhx1; Seems to play a role in dorsal axis formation. (405 aa)
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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