STRINGSTRING
mdka mdka selp selp sod2 sod2 lamb1b lamb1b nts nts ntf3 ntf3 il10 il10 lectin lectin cd44a cd44a nrcama nrcama ptprja ptprja Sdc3 Sdc3 lamb1a lamb1a fgf2 fgf2 agrn agrn mag mag bcan bcan il1b il1b hspg2 hspg2 l1cama l1cama tnfb tnfb bdnf bdnf mdkb mdkb dcn dcn itgb1a itgb1a
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
mdkaMidkine-related growth factor Mdk1. (146 aa)
selpSelectin P. (868 aa)
sod2Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. (224 aa)
lamb1bLaminin, beta 1b. (1767 aa)
ntsNeurotensin. (165 aa)
ntf3Neurotrophin-3; Seems to promote the survival of visceral and proprioceptive sensory neurons; Belongs to the NGF-beta family. (243 aa)
il10Interleukin-10. (180 aa)
lectinLectin. (152 aa)
cd44aCD44 molecule (Indian blood group) a. (392 aa)
nrcamaNeuronal cell adhesion molecule a. (1285 aa)
ptprjaProtein tyrosine phosphatase receptor type Ja. (1650 aa)
Sdc3Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family. (436 aa)
lamb1aLaminin, beta 1a. (1785 aa)
fgf2Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (154 aa)
agrnAgrin. (1926 aa)
magMyelin-associated glycoprotein. (653 aa)
bcanBrevican. (1295 aa)
il1bInterleukin-1. (284 aa)
hspg2Heparan sulfate proteoglycan 2. (3462 aa)
l1camaNeural cell adhesion molecule L1.2; Cell adhesion molecule with an important role in the development of the nervous system. Involved in neuron-neuron adhesion, neurite fasciculation, outgrowth of neurites, etc. Binds to axonin on neurons (By similarity); Belongs to the immunoglobulin superfamily. L1/neurofascin/NgCAM family. (1271 aa)
tnfbTumor necrosis factor b (TNF superfamily, member 2). (242 aa)
bdnfBrain-derived neurotrophic factor; Promotes the survival of neuronal populations that are all located either in the central nervous system or directly connected to it; Belongs to the NGF-beta family. (270 aa)
mdkbMidkine-related growth factor Mdk2. (147 aa)
dcnDecorin; May affect the rate of fibrils formation. Belongs to the small leucine-rich proteoglycan (SLRP) family. SLRP class I subfamily. (373 aa)
itgb1aIntegrin beta; Belongs to the integrin beta chain family. (798 aa)
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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