STRINGSTRING
ptn ptn nos1 nos1 nos2a nos2a sv2 sv2 pcp4a pcp4a nrgna nrgna nos2b nos2b
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ptnPleiotrophin. (158 aa)
nos1Nitric oxide synthase; Produces nitric oxide (NO). (1431 aa)
nos2aNitric oxide synthase; Produces nitric oxide (NO). (1079 aa)
sv2Synaptic vesicle glycoprotein 2. (522 aa)
pcp4aPurkinje cell protein 4a. (63 aa)
nrgnaNeurogranin (protein kinase C substrate, RC3) a. (60 aa)
nos2bNitric oxide synthase; Produces nitric oxide (NO). (1077 aa)
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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