STRINGSTRING
casp9 casp9 casp3a casp3a gpx4b gpx4b nos1 nos1 gpx9 gpx9 gpx7 gpx7 nos2a nos2a tlr4ba tlr4ba tlr4al tlr4al gpx4a gpx4a sirt1 sirt1 ntf3 ntf3 casp3b casp3b gpx3 gpx3 sod2 sod2 ido1 ido1 nr3c1 nr3c1 ache ache nos2b nos2b crhb crhb tlr4bb tlr4bb gpx1a gpx1a gpx8 gpx8 gpx1b gpx1b bdnf bdnf
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
casp9Caspase 9, apoptosis-related cysteine peptidase; Belongs to the peptidase C14A family. (436 aa)
casp3aCaspase 3, apoptosis-related cysteine peptidase a; Belongs to the peptidase C14A family. (282 aa)
gpx4bGlutathione peroxidase; Belongs to the glutathione peroxidase family. (170 aa)
nos1Nitric oxide synthase; Produces nitric oxide (NO). (1431 aa)
gpx9Glutathione peroxidase; Belongs to the glutathione peroxidase family. (140 aa)
gpx7Glutathione peroxidase; Belongs to the glutathione peroxidase family. (186 aa)
nos2aNitric oxide synthase; Produces nitric oxide (NO). (1079 aa)
tlr4baToll-like receptor 4b, duplicate a. (787 aa)
tlr4alToll-like receptor 4a, like. (816 aa)
gpx4aGlutathione peroxidase; Belongs to the glutathione peroxidase family. (186 aa)
sirt1Sirtuin 1. (710 aa)
ntf3Neurotrophin-3; Seems to promote the survival of visceral and proprioceptive sensory neurons; Belongs to the NGF-beta family. (243 aa)
casp3bCaspase 3, apoptosis-related cysteine peptidase b; Belongs to the peptidase C14A family. (285 aa)
gpx3Glutathione peroxidase; Belongs to the glutathione peroxidase family. (222 aa)
sod2Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. (224 aa)
ido1Indoleamine 2,3-dioxygenase 1. (435 aa)
nr3c1Nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor). (746 aa)
acheAcetylcholinesterase; Terminates signal transduction at the neuromuscular junction by rapid hydrolysis of the acetylcholine released into the synaptic cleft. (634 aa)
nos2bNitric oxide synthase; Produces nitric oxide (NO). (1077 aa)
crhbCorticotropin-releasing hormone b. (162 aa)
tlr4bbToll-like receptor 4b, duplicate b. (819 aa)
gpx1aGlutathione peroxidase; Belongs to the glutathione peroxidase family. (191 aa)
gpx8Probable glutathione peroxidase 8; Belongs to the glutathione peroxidase family. (210 aa)
gpx1bGlutathione peroxidase; Belongs to the glutathione peroxidase family. (142 aa)
bdnfBrain-derived neurotrophic factor; Promotes the survival of neuronal populations that are all located either in the central nervous system or directly connected to it; Belongs to the NGF-beta family. (270 aa)
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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