STRINGSTRING
vcam1b vcam1b tfr1a tfr1a egfra egfra tfr1b tfr1b gzm3.3 gzm3.3 gzm3.4 gzm3.4 cd44a cd44a furinb furinb furina furina blvra blvra gzm3 gzm3 gzm3.2 gzm3.2 casp3b casp3b casp9 casp9 mb mb casp3a casp3a mmp2 mmp2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
vcam1bVascular cell adhesion molecule 1b. (808 aa)
tfr1aTransferrin receptor 1a. (770 aa)
egfraEpidermal growth factor receptor precursor. (625 aa)
tfr1bTransferrin receptor 1b. (771 aa)
gzm3.3Granzyme 3, tandem duplicate 3; Belongs to the peptidase S1 family. (257 aa)
gzm3.4Granzyme 3, tandem duplicate 4. (251 aa)
cd44aCD44 molecule (Indian blood group) a. (392 aa)
furinbFurin (paired basic amino acid cleaving enzyme) b; Belongs to the peptidase S8 family. (823 aa)
furinaFurin (paired basic amino acid cleaving enzyme) a; Belongs to the peptidase S8 family. (806 aa)
blvraBiliverdin reductase A. (292 aa)
gzm3Granzyme 3, tandem duplicate 1; Belongs to the peptidase S1 family. (253 aa)
gzm3.2Granzyme 3, tandem duplicate 2. (249 aa)
casp3bCaspase 3, apoptosis-related cysteine peptidase b; Belongs to the peptidase C14A family. (285 aa)
casp9Caspase 9, apoptosis-related cysteine peptidase; Belongs to the peptidase C14A family. (436 aa)
mbMyoglobin; Serves as a reserve supply of oxygen and facilitates the movement of oxygen within muscles. (147 aa)
casp3aCaspase 3, apoptosis-related cysteine peptidase a; Belongs to the peptidase C14A family. (282 aa)
mmp2Matrix metalloproteinase 2. (657 aa)
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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