STRINGSTRING
irf1b irf1b nos1 nos1 rela rela relb relb il10 il10 serpine1 serpine1 rel rel irf1a irf1a jun jun tlr2 tlr2 myd88 myd88 stat1a stat1a tnfb tnfb
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
irf1bInterferon regulatory factor. (287 aa)
nos1Nitric oxide synthase; Produces nitric oxide (NO). (1431 aa)
relaV-rel avian reticuloendotheliosis viral oncogene homolog A. (455 aa)
relbV-rel avian reticuloendotheliosis viral oncogene homolog B. (582 aa)
il10Interleukin-10. (180 aa)
serpine1Serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1; Belongs to the serpin family. (392 aa)
relV-rel avian reticuloendotheliosis viral oncogene homolog. (596 aa)
irf1aInterferon regulatory factor. (251 aa)
junJun proto-oncogene, AP-1 transcription factor subunit; Belongs to the bZIP family. (308 aa)
tlr2Toll-like receptor 2. (788 aa)
myd88Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and Il-1 receptor signaling pathway in the innate immune response. (284 aa)
stat1aSignal transducer and activator of transcription. (749 aa)
tnfbTumor necrosis factor b (TNF superfamily, member 2). (242 aa)
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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