STRINGSTRING
apoa1a apoa1a tnfb tnfb gsna gsna ifnphi1 ifnphi1 mpx mpx scin scin gsnb gsnb nos2b nos2b gapdhs gapdhs acta1b acta1b gapdh gapdh saa saa cybb cybb scinlb scinlb il10 il10 nos2a nos2a ltb4r ltb4r il6 il6 nos1 nos1 scinla scinla scarb2a scarb2a tlr9 tlr9
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
apoa1aProapolipoprotein A-I; Participates in the reverse transport of cholesterol from tissues to the liver for excretion by promoting cholesterol efflux from tissues and by acting as a cofactor for the lecithin cholesterol acyltransferase (LCAT). (262 aa)
tnfbTumor necrosis factor b (TNF superfamily, member 2). (242 aa)
gsnaGelsolin a. (729 aa)
ifnphi1Interferon phi 1. (185 aa)
mpxMyeloid-specific peroxidase. (893 aa)
scinScinderin. (733 aa)
gsnbGelsolin b. (728 aa)
nos2bNitric oxide synthase; Produces nitric oxide (NO). (1077 aa)
gapdhsGlyceraldehyde-3-phosphate dehydrogenase 2; Glyceraldehyde-3-phosphate dehydrogenase is a key enzyme in glycolysis that catalyzes the first step of the pathway by converting D-glyceraldehyde 3-phosphate (G3P) into 3-phospho-D-glyceroyl phosphate. (335 aa)
acta1bActin alpha 1, skeletal muscle b. (377 aa)
gapdhGlyceraldehyde-3-phosphate dehydrogenase; Has both glyceraldehyde-3-phosphate dehydrogenase and nitrosylase activities, thereby playing a role in glycolysis and nuclear functions, respectively. Glyceraldehyde-3-phosphate dehydrogenase is a key enzyme in glycolysis that catalyzes the first step of the pathway by converting D-glyceraldehyde 3-phosphate (G3P) into 3-phospho-D-glyceroyl phosphate. Modulates the organization and assembly of the cytoskeleton. Also participates in nuclear events including transcription, RNA transport, DNA replication and apoptosis. Nuclear functions are proba [...] (333 aa)
saaSerum amyloid A protein; Major acute phase reactant. Apolipoprotein of the HDL complex. (121 aa)
cybbCytochrome b-245, beta polypeptide (chronic granulomatous disease). (565 aa)
scinlbScinderin-like b. (720 aa)
il10Interleukin-10. (180 aa)
nos2aNitric oxide synthase; Produces nitric oxide (NO). (1079 aa)
ltb4rLeukotriene B4 receptor; Belongs to the G-protein coupled receptor 1 family. (380 aa)
il6Interleukin 6 (interferon, beta 2). (231 aa)
nos1Nitric oxide synthase; Produces nitric oxide (NO). (1431 aa)
scinlaScinderin-like a. (720 aa)
scarb2aScavenger receptor class B, member 2a; Belongs to the CD36 family. (531 aa)
tlr9Toll-like receptor 9; Belongs to the Toll-like receptor family. (1069 aa)
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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