25 items (Danio rerio) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

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Your Input:
	vdac1	Voltage-dependent anion channel 1. (283 aa)
	sod1	Superoxide dismutase [Cu-Zn]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems; Belongs to the Cu-Zn superoxide dismutase family. (154 aa)
	sdhb	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q). (280 aa)
	fbxo32	F-box protein 32. (356 aa)
	cd36	CD36 molecule (thrombospondin receptor); Belongs to the CD36 family. (465 aa)
	trim63a	Tripartite motif-containing 63a. (345 aa)
	atp5fa1	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. (551 aa)
	chrna1	Acetylcholine receptor subunit alpha; After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane. (456 aa)
	chrnd	Cholinergic receptor, nicotinic, delta (muscle). (518 aa)
	ndufs3	NADH:ubiquinone oxidoreductase core subunit S3; Belongs to the complex I 30 kDa subunit family. (255 aa)
	myog	Myogenin. (256 aa)
	myod1	Myoblast determination protein 1 homolog; May act as a transcriptional activator that promotes transcription of muscle-specific target genes and plays a role in muscle differentiation. (275 aa)
	myl1	Myosin, light chain 1, alkali; skeletal, fast; Non-regulatory myosin light chain required for proper formation and/or maintenance of myofibers, and thus appropriate muscle function. (190 aa)
	LOC100329813	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1946 aa)
	dnajc6	DnaJ (Hsp40) homolog, subfamily C, member 6. (913 aa)
	sv2a	Synaptic vesicle glycoprotein 2A. (733 aa)
	pax7a	Transcription factor PAX7C. (507 aa)
	cpt2	Carnitine O-palmitoyltransferase 2, mitochondrial. (669 aa)
	SDHB	Si:dkey-31b16.7. (185 aa)
	chrng	Cholinergic receptor, nicotinic, gamma. (540 aa)
	myf5	Myogenic factor. (237 aa)
	myh7	Myosin heavy chain 7; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1938 aa)
	chrnb1	Cholinergic receptor, nicotinic, beta 1 (muscle). (492 aa)
	sirt1	Sirtuin 1. (710 aa)
	mylpfa	Myosin light chain, phosphorylatable, fast skeletal muscle a. (169 aa)

Your Current Organism:

Danio rerio

NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC100329813	myh7	ENSDARP00000139186	ENSDARP00000090306	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Myosin heavy chain 7; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.543
LOC100329813	myl1	ENSDARP00000139186	ENSDARP00000004932	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Myosin, light chain 1, alkali; skeletal, fast; Non-regulatory myosin light chain required for proper formation and/or maintenance of myofibers, and thus appropriate muscle function.	0.852
SDHB	atp5fa1	ENSDARP00000118231	ENSDARP00000027947	Si:dkey-31b16.7.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.862
SDHB	ndufs3	ENSDARP00000118231	ENSDARP00000013902	Si:dkey-31b16.7.	NADH:ubiquinone oxidoreductase core subunit S3; Belongs to the complex I 30 kDa subunit family.	0.995
SDHB	vdac1	ENSDARP00000118231	ENSDARP00000066372	Si:dkey-31b16.7.	Voltage-dependent anion channel 1.	0.549
atp5fa1	SDHB	ENSDARP00000027947	ENSDARP00000118231	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Si:dkey-31b16.7.	0.862
atp5fa1	ndufs3	ENSDARP00000027947	ENSDARP00000013902	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	NADH:ubiquinone oxidoreductase core subunit S3; Belongs to the complex I 30 kDa subunit family.	0.951
atp5fa1	sdhb	ENSDARP00000027947	ENSDARP00000062263	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	0.894
atp5fa1	vdac1	ENSDARP00000027947	ENSDARP00000066372	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Voltage-dependent anion channel 1.	0.841
cd36	cpt2	ENSDARP00000050752	ENSDARP00000122226	CD36 molecule (thrombospondin receptor); Belongs to the CD36 family.	Carnitine O-palmitoyltransferase 2, mitochondrial.	0.417
cd36	sirt1	ENSDARP00000050752	ENSDARP00000088981	CD36 molecule (thrombospondin receptor); Belongs to the CD36 family.	Sirtuin 1.	0.487
chrna1	chrnb1	ENSDARP00000021860	ENSDARP00000092302	Acetylcholine receptor subunit alpha; After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.	Cholinergic receptor, nicotinic, beta 1 (muscle).	0.919
chrna1	chrnd	ENSDARP00000021860	ENSDARP00000016537	Acetylcholine receptor subunit alpha; After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.	Cholinergic receptor, nicotinic, delta (muscle).	0.885
chrna1	chrng	ENSDARP00000021860	ENSDARP00000110378	Acetylcholine receptor subunit alpha; After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.	Cholinergic receptor, nicotinic, gamma.	0.874
chrna1	myog	ENSDARP00000021860	ENSDARP00000010347	Acetylcholine receptor subunit alpha; After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.	Myogenin.	0.667
chrnb1	chrna1	ENSDARP00000092302	ENSDARP00000021860	Cholinergic receptor, nicotinic, beta 1 (muscle).	Acetylcholine receptor subunit alpha; After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.	0.919
chrnb1	chrnd	ENSDARP00000092302	ENSDARP00000016537	Cholinergic receptor, nicotinic, beta 1 (muscle).	Cholinergic receptor, nicotinic, delta (muscle).	0.751
chrnb1	chrng	ENSDARP00000092302	ENSDARP00000110378	Cholinergic receptor, nicotinic, beta 1 (muscle).	Cholinergic receptor, nicotinic, gamma.	0.754
chrnd	chrna1	ENSDARP00000016537	ENSDARP00000021860	Cholinergic receptor, nicotinic, delta (muscle).	Acetylcholine receptor subunit alpha; After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.	0.885
chrnd	chrnb1	ENSDARP00000016537	ENSDARP00000092302	Cholinergic receptor, nicotinic, delta (muscle).	Cholinergic receptor, nicotinic, beta 1 (muscle).	0.751

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