STRINGSTRING
col1a1a col1a1a ptch1 ptch1 hhip hhip tcf7 tcf7 sufu sufu bmp1a bmp1a
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
col1a1aCollagen, type I, alpha 1a. (1447 aa)
ptch1Protein patched homolog 1. (1475 aa)
hhipHedgehog-interacting protein. (693 aa)
tcf7Transcription factor 7. (355 aa)
sufuSuppressor of fused homolog. (485 aa)
bmp1aMetalloendopeptidase. (986 aa)
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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