STRINGSTRING
tbx16 tbx16 atp1b1a atp1b1a cdh2 cdh2 nkx2.7 nkx2.7 alas1 alas1 mtmr8 mtmr8 surf1 surf1 cbfa2t3 cbfa2t3 nkx2.9 nkx2.9 calm2a calm2a ak2 ak2 gli2a gli2a jag2b jag2b isl1 isl1 dnmt1 dnmt1 smo smo ncoa4 ncoa4 pax4 pax4 klhl42 klhl42 atp6v0ca atp6v0ca gli2b gli2b mtch2 mtch2 pdx1 pdx1 gata3 gata3 dlc dlc rpl27 rpl27 emx3 emx3 pak4 pak4 noto noto hand2 hand2 mcrs1 mcrs1 sox21b sox21b osr1 osr1 lgsn lgsn irx7 irx7 hsf4 hsf4 zic2a zic2a pes pes six1b six1b rps27.1 rps27.1 wt1a wt1a spi1b spi1b hsp70l hsp70l b4galt7 b4galt7 glra4a glra4a ppdpfa ppdpfa wdr73 wdr73 jak1 jak1 pax3a pax3a diras1a diras1a mb mb flvcr1 flvcr1 csrnp1a csrnp1a mpx mpx cdk10 cdk10 etv2 etv2 tmem165 tmem165 enpp2 enpp2 jak3 jak3 wnt8b wnt8b hdac1 hdac1 mnx1 mnx1 thap11 thap11 cebpa cebpa rgs18 rgs18 atoh8 atoh8 snrnp70 snrnp70 mitfa mitfa klf17 klf17 olig2 olig2 rps29 rps29 fgf16 fgf16 ackr3b ackr3b csf3r csf3r cdk9 cdk9 notch3 notch3 dhps dhps zfand3 zfand3 sox3 sox3 sec13 sec13 prox1a prox1a id2a id2a leo1 leo1 wnt1 wnt1 mastl mastl ruvbl2 ruvbl2 foxi3a foxi3a sf3b1 sf3b1 epas1b epas1b hoxd4a hoxd4a gata2a gata2a sdc4 sdc4 lmo4a lmo4a klf8 klf8 lrsam1 lrsam1 adnp2a adnp2a jam3b jam3b hipk2 hipk2 foxe3 foxe3 rasa3 rasa3 clp1 clp1 yap1 yap1 dld dld syf2 syf2 gfer gfer meis1b meis1b cdipt cdipt camk1da camk1da rx1 rx1 zdhhc15b zdhhc15b klf4 klf4 atxn7 atxn7 cdx4 cdx4 tet2 tet2 birc5a birc5a mettl22 mettl22 pcsk9 pcsk9 rfng rfng capn12 capn12 dmbx1a dmbx1a marcksa marcksa scn12aa scn12aa prdm16 prdm16 insm1a insm1a rab11fip4a rab11fip4a camk4 camk4 etv5a etv5a tp73 tp73 dnmt3bb.2 dnmt3bb.2 nr2e3 nr2e3 her8a her8a nrarpa nrarpa notch2 notch2 grna grna lef1 lef1 htr1ab htr1ab wnt8a wnt8a cdh6 cdh6 adamts9 adamts9 zgc:153115 zgc:153115 diras1b diras1b il7r il7r nfil3 nfil3 kdm6bb kdm6bb plcg1 plcg1 pld1a pld1a prpf8 prpf8 hcfc1b hcfc1b birc5b birc5b wnt16 wnt16 cox5aa cox5aa kmt2a kmt2a sbds sbds met met gckr gckr tal2 tal2 wdr43 wdr43 disc1 disc1 shha shha top3a top3a ap2a1 ap2a1 cdc73 cdc73 med12 med12 ndrg4 ndrg4 nrg1 nrg1 nbeal2 nbeal2 agtpbp1 agtpbp1 dner dner jak2a jak2a mib1 mib1 kif3b kif3b sufu sufu agrn agrn cdh4 cdh4 bmp5 bmp5 lama1 lama1 rest rest tfr1a tfr1a scn5lab scn5lab pepd pepd irx1a irx1a eps15l1b eps15l1b snw1 snw1 cox5ab cox5ab krit1 krit1 apc apc nop14 nop14 rbpms rbpms sf3a3 sf3a3 smarcal1 smarcal1 hal hal dnajb1a dnajb1a iqcg iqcg trpm7 trpm7 tcf7l1b tcf7l1b csf1ra csf1ra lpar3 lpar3 npas4l npas4l pax6b pax6b cdx1b cdx1b tfap2a tfap2a
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
Your Input:
tbx16T-box transcription factor 16. (470 aa)
atp1b1aSodium/potassium-transporting ATPase subunit beta; This is the non-catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of Na(+) and K(+) ions across the plasma membrane. Belongs to the X(+)/potassium ATPases subunit beta family. (306 aa)
cdh2Cadherin-2; Calcium-dependent cell adhesion protein; preferentially mediates homotypic cell-cell adhesion (By similarity). Cadherins contribute to the sorting of heterogeneous cell types, and thereby play an important role during embryonic development. Required for normal neural tube morphogenesis. Required to allow mid- and hindbrain neurons to reach and maintain their appropriate positions within the neural tube by restricting neuronal motility within the embryonic mid- and hindbrain. (893 aa)
nkx2.7NK2 transcription factor-related 7. (269 aa)
alas15-aminolevulinate synthase. (621 aa)
mtmr8Myotubularin-related protein 8; Phosphatase that acts on lipids with a phosphoinositol headgroup (By similarity). Has phosphatase activity towards phosphatidylinositol 3-phosphate and phosphatidylinositol 3,5- bisphosphate (By similarity); Belongs to the protein-tyrosine phosphatase family. Non- receptor class myotubularin subfamily. (632 aa)
surf1SURF1-like protein; Probably involved in the biogenesis of the COX complex. Belongs to the SURF1 family. (309 aa)
cbfa2t3CBFA2/RUNX1 partner transcriptional co-repressor 3. (627 aa)
nkx2.9NK2 transcription factor-related, locus 9 (Drosophila). (113 aa)
calm2aCalmodulin; Calmodulin mediates the control of a large number of enzymes, ion channels and other proteins by Ca(2+). Among the enzymes to be stimulated by the calmodulin-Ca(2+) complex are a number of protein kinases and phosphatases. (149 aa)
ak2Adenylate kinase 2, mitochondrial; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism. Adenylate kinase activity is critical for regulation of the phosphate utilization and the AMP de novo biosynthesis pathways. Plays a key role in hematopoiesis. (241 aa)
gli2aGLI family zinc finger 2a. (1439 aa)
jag2bDelta-like protein; Putative Notch ligand involved in the mediation of Notch signaling. (1254 aa)
isl1Insulin gene enhancer protein isl-1; DNA-binding transcriptional activator. Recognizes and binds to the consensus octamer binding site 5'-ATAATTAA-3' in promoter of target genes. Plays a fundamental role in the gene regulatory network essential for retinal ganglion cell (RGC) differentiation. May be involved in subtype specialization of primary motoneurons. May bind to insulin gene enhancer sequences. Essential for heart development (By similarity). (349 aa)
dnmt1DNA (cytosine-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. (1500 aa)
smoSmoothened, frizzled class receptor; Belongs to the G-protein coupled receptor Fz/Smo family. (822 aa)
ncoa4Nuclear receptor coactivator 4. (576 aa)
pax4Paired box 4. (344 aa)
klhl42Kelch-like family, member 42. (472 aa)
atp6v0caV-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. (154 aa)
gli2bGLI family zinc finger 2b. (1225 aa)
mtch2Mitochondrial carrier homolog 2; Belongs to the mitochondrial carrier (TC 2.A.29) family. (300 aa)
pdx1Pancreatic and duodenal homeobox 1. (246 aa)
gata3Transcription factor GATA-3. (438 aa)
dlcDelta-like protein C; Acts as a ligand for Notch receptors and is involved in somitogenesis. Can activate Notch receptors. Required in somite segmentation to keep the oscillations of neighboring presomitic mesoderm cells synchronized. (664 aa)
rpl2760S ribosomal protein L27; Component of the large ribosomal subunit. (136 aa)
emx3Empty spiracles homeobox 3. (233 aa)
pak4Non-specific serine/threonine protein kinase. (664 aa)
notoNotochord homeobox. (241 aa)
hand2Heart- and neural crest derivatives-expressed protein 2; Essential for myocardial and pectoral fin differentiation, patterning and morphogenesis. (205 aa)
mcrs1Microspherule protein 1. (472 aa)
sox21bTranscription factor Sox-21-B; Acts as a negative regulator of transcription. (245 aa)
osr1Protein odd-skipped-related 1; Transcriptional repressor (By similarity). Regulates mesoderm versus endoderm differentiation during gastrulation to regulate kidney versus vascular cell fate. Acts upstream of pax2a in kidney development and functions in glomerular maturation, after podocyte specification. Belongs to the Odd C2H2-type zinc-finger protein family. (264 aa)
lgsnLengsin, lens protein with glutamine synthetase domain; Belongs to the glutamine synthetase family. (668 aa)
irx7Iroquois homeodomain transcription factor Ziro7. (314 aa)
hsf4Heat shock transcription factor 4. (286 aa)
zic2aZIC family member 2 (Odd-paired homolog, Drosophila), A. (445 aa)
pesPescadillo; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (583 aa)
six1bHomeobox protein six1b; Transcription factor that is involved in the regulation of cell proliferation, apoptosis and embryonic development. Depending on context, functions as transcriptional repressor or activator. Transcriptional activation is enhanced by eya1 (in vitro). Plays an important role in the development of the inner ear, where it promotes hair cell proliferation and inhibits proliferation of neural progenitor cells. Required for normal myogenesis. Plays a role in the development of fast muscle fibers throughout the body, as well as the development of craniofacial muscles. R [...] (284 aa)
rps27.140S ribosomal protein S27. (84 aa)
wt1aWT1 transcription factor a. (419 aa)
spi1bSI:bY184L24.2.1 (Transcription factor spi1). (296 aa)
hsp70lNovel protein similar to heat shock cognate 70-kd protein; Belongs to the heat shock protein 70 family. (643 aa)
b4galt7Xylosylprotein beta 1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I). (317 aa)
glra4aGlycine receptor, alpha 4a; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (457 aa)
ppdpfaPancreatic progenitor cell differentiation and proliferation factor A; Probable regulator of exocrine pancreas development. (117 aa)
wdr73WD repeat-containing protein 73; May play a role in the regulation of microtubule organization and dynamics; Belongs to the WD repeat WDR73 family. (376 aa)
jak1Tyrosine-protein kinase JAK1; Tyrosine kinase of the non-receptor type. Appears to be required in early development for specific cell migrations (epiboly), expression of homeobox protein goosecoid and formation of anterior structures. (1153 aa)
pax3aTranscription factor PAX3. (509 aa)
diras1aDIRAS family, GTP-binding RAS-like 1a. (195 aa)
mbMyoglobin; Serves as a reserve supply of oxygen and facilitates the movement of oxygen within muscles. (147 aa)
flvcr1FLVCR heme transporter 1. (527 aa)
csrnp1aCysteine-serine-rich nuclear protein 1a. (514 aa)
mpxMyeloid-specific peroxidase. (893 aa)
cdk10Cyclin-dependent kinase 10; Belongs to the protein kinase superfamily. (360 aa)
etv2ETS variant transcription factor 2. (366 aa)
tmem165GDT1 family protein. (305 aa)
enpp2Ectonucleotide pyrophosphatase/phosphodiesterase 2. (850 aa)
jak3Tyrosine-protein kinase. (1103 aa)
wnt8bProtein Wnt-8b; Ligand for members of the frizzled family of seven transmembrane receptors. Probable developmental protein. May be a signaling molecule which affects the development of discrete regions of tissues. Is likely to signal over only few cell diameters. May play a role in the establishment of polarity in the nervous system. (358 aa)
hdac1Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes. (480 aa)
mnx1Motor neuron and pancreas homeobox 1. (311 aa)
thap11THAP domain-containing protein 11; Transcriptional repressor that plays a central role for embryogenesis and the pluripotency of embryonic stem (ES) cells. Sequence-specific DNA-binding factor that represses gene expression in pluripotent ES cells by directly binding to key genetic loci and recruiting epigenetic modifiers (By similarity). (257 aa)
cebpaCCAAT/enhancer-binding protein. (288 aa)
rgs18Regulator of G protein-signaling 18. (208 aa)
atoh8Protein atonal homolog 8; Transcription factor that binds a palindromic (canonical) core consensus DNA sequence 5'-CANNTG- 3' known as an E-box element, possibly as a heterodimer with other bHLH proteins (By similarity). During development, is required for heart looping and swim bladder formation by acting in concert with GATA4 AND ZFPM1. During the development of both the retina and skeletal muscles is required for neural retinal cell through modulating PAX6 and NEUROG3 expression and myogenic differentiation. (266 aa)
snrnp70Small nuclear ribonucleoprotein 70 (U1). (495 aa)
mitfaMicrophthalmia-associated transcription factor a. (412 aa)
klf17Kruppel-like factor 17. (409 aa)
olig2Oligodendrocyte lineage transcription factor 2. (273 aa)
rps29Ribosomal protein S29. (56 aa)
fgf16Fibroblast growth factor 16; Plays a crucial role in pectoral fin bud outgrowth. Belongs to the heparin-binding growth factors family. (203 aa)
ackr3bAtypical chemokine receptor 3b; Belongs to the G-protein coupled receptor 1 family. (362 aa)
csf3rColony-stimulating factor 3 receptor (granulocyte). (810 aa)
cdk9Cyclin-dependent kinase 9 (CDC2-related kinase); Belongs to the protein kinase superfamily. (393 aa)
notch3Notch receptor 3. (2468 aa)
dhpsDeoxyhypusine synthase. (361 aa)
zfand3Zinc finger, AN1-type domain 3. (226 aa)
sox3Transcription factor Sox-3; Transcriptional activator. (300 aa)
sec13SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family. (320 aa)
prox1aProspero homeobox 1a. (739 aa)
id2aInhibitor of DNA binding 2, dominant negative helix-loop-helix protein, a. (137 aa)
leo1RNA polymerase-associated protein LEO1; Component of the PAF1 complex (PAF1C) which has multiple functions during transcription by RNA polymerase II. PAF1C associates with RNA polymerase II, is involved in transcriptional elongation and in histone modifications including methylation on histone H3 'Lys-4' (H3K4me3) (By similarity). PAF1C seems to be required for multiple steps in cardiac formation. Involved in heart development and required for differentiation of the atrioventricular boundary. Required for neural crest cell development. (696 aa)
wnt1Protein Wnt-1; Ligand for members of the frizzled family of seven transmembrane receptors. Acts in the canonical Wnt signaling pathway by promoting beta-catenin-dependent transcriptional activation (By similarity). Involved in neurogenesis. Performs a partially redundant function with wnt10b in the formation of the midbrain-hindbrain boundary (MHB) organizer. In the hindbrain, mediates lateral inhibition of boundary cell specification, probably via up-regulation of proneural and Delta gene expression in non-boundary cells; localized expression of wnt1 in boundary cells is maintained vi [...] (370 aa)
mastlSerine/threonine-protein kinase greatwall; Serine/threonine kinase that plays a key role in M phase by acting as a regulator of mitosis entry and maintenance. Acts by promoting the inactivation of protein phosphatase 2A (PP2A) during M phase: does not directly inhibit PP2A but acts by mediating phosphorylation and subsequent activation of arpp19 and ensa at 'Ser- 62' and 'Ser-74', respectively. ARPP19 and ENSA are phosphatase inhibitors that specifically inhibit the ppp2r2d (PR55-delta) subunit of PP2A. Inactivation of PP2A during M phase is essential to keep cyclin-B1-CDK1 activity hi [...] (860 aa)
ruvbl2RuvB-like 2; Has double-stranded DNA-stimulated ATPase activity. Has ATP-dependent DNA helicase (5' to 3') activity suggesting a role in nuclear processes such as recombination and transcription (By similarity). Represses gene activation mediated by beta-catenin. Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome- activated ATPase activity and catalyzes ATP-dependent nucleosome sliding (By similarity). Involved in the endoplasmic reticulum (ER)- associated degradation (ERAD) pathway where it negatively regulates expression of ER stress [...] (463 aa)
foxi3aForkhead box I3a. (353 aa)
sf3b1Splicing factor 3b, subunit 1. (1315 aa)
epas1bEndothelial PAS domain protein 1b. (834 aa)
hoxd4aHomeobox protein Hox-D4a; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. (256 aa)
gata2aGATA-binding protein 2a. (456 aa)
sdc4Syndecan 4. (207 aa)
lmo4aLIM domain only 4a. (167 aa)
klf8Kruppel-like factor 8. (343 aa)
lrsam1Leucine-rich repeat and sterile alpha motif-containing 1. (721 aa)
adnp2aADNP homeobox 2a. (962 aa)
jam3bJunctional adhesion molecule 3B; Junctional adhesion protein that mediates heterotypic cell- cell interactions to regulate different cellular processes (By similarity). During myogenesis, it is involved in myocyte fusion through the binding of jam2a on neighboring myocytes. (333 aa)
hipk2Homeodomain-interacting protein kinase 2. (1220 aa)
foxe3Forkhead box E3. (422 aa)
rasa3RAS p21 protein activator 3. (833 aa)
clp1Polyribonucleotide 5'-hydroxyl-kinase Clp1; Polynucleotide kinase that can phosphorylate the 5'-hydroxyl groups of double-stranded RNA (dsRNA), single-stranded RNA (ssRNA), double stranded DNA (dsDNA) and double-stranded DNA:RNA hybrids. dsRNA is phosphorylated more efficiently than dsDNA, and the RNA component of a DNA:RNA hybrid is phosphorylated more efficiently than the DNA component. Plays a role in both tRNA splicing and mRNA 3'-end formation. Component of the tRNA splicing endonuclease complex: phosphorylates the 5'-terminus of the tRNA 3'-exon during tRNA splicing; this phospho [...] (443 aa)
yap1Transcriptional coactivator YAP1; Transcriptional regulator which can act both as a coactivator and a corepressor and is the critical downstream regulatory target in the Hippo signaling pathway that plays a pivotal role in organ size control and tumor suppression by restricting proliferation and promoting apoptosis (By similarity). Required for expansion of the neural plate and neural plate border zone progenitor pools. Acts as a direct regulator of pax3 expression via interaction with tead1. Plays a key role in tissue tension and 3D tissue shape by regulating cortical actomyosin netwo [...] (442 aa)
dldDelta-like protein D; Acts as a ligand for Notch receptors and is involved in primary neurogenesis and somitogenesis. Can activate Notch receptors, thereby playing a key role in lateral inhibition, a process that prevents the immediate neighbors of each nascent neural cell from simultaneously embarking on neural differentiation. Required in somite segmentation to keep the oscillations of neighboring presomitic mesoderm cells synchronized. (717 aa)
syf2Pre-mRNA-splicing factor syf2; Involved in pre-mRNA splicing as component of the spliceosome. (238 aa)
gferSulfhydryl oxidase. (191 aa)
meis1bMyeloid ecotropic viral integration 1. (388 aa)
cdiptCDP-diacylglycerol--inositol 3-phosphatidyltransferase. (213 aa)
camk1daCalcium/calmodulin-dependent protein kinase 1Da; Belongs to the protein kinase superfamily. (433 aa)
rx1Retinal homeobox protein Rx1; Plays a critical role in eye formation by regulating the initial specification of retinal cells and/or their subsequent proliferation; Belongs to the paired homeobox family. Bicoid subfamily. (330 aa)
zdhhc15bPalmitoyltransferase ZDHHC15B; Catalyzes palmitoylation of Cys residues on target proteins. (332 aa)
klf4Kruppel-like factor 4. (340 aa)
atxn7Ataxin 7. (866 aa)
cdx4Caudal type homeo box transcription factor 4. (270 aa)
tet2Tet methylcytosine dioxygenase 2. (1715 aa)
birc5aBaculoviral IAP repeat-containing 5a. (190 aa)
mettl22Methyltransferase-like 22. (357 aa)
pcsk9Proprotein convertase subtilisin/kexin type 9; Belongs to the peptidase S8 family. (667 aa)
rfngBeta-1,3-N-acetylglucosaminyltransferase radical fringe; Glycosyltransferase that initiates the elongation of O-linked fucose residues attached to EGF-like repeats in the extracellular domain of Notch molecules (By similarity). Regulates neurogenesis in the hindbrain; involved in boundary cell specification via Notch- mediated activation of wnt1 expression. (362 aa)
capn12Calpain 12; Belongs to the peptidase C2 family. (713 aa)
dmbx1aDiencephalon/mesencephalon homeobox protein 1-A; Required for eye and tectum development. May act as a transcriptional repressor. (383 aa)
marcksaMyristoylated alanine-rich protein kinase C substrate a. (236 aa)
scn12aaSodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient. (1932 aa)
prdm16Si:ch211-263k4.2. (927 aa)
insm1aInsulinoma-associated protein 1a; May act as a transcriptional regulator. May play a role in neurogenesis and neuroendocrine cell differentiation during embryonic development (By similarity). (383 aa)
rab11fip4aRab11 family-interacting protein 4A; Acts as a regulator of endocytic traffic by participating in membrane delivery. Required for the abcission step in cytokinesis, possibly by acting as an 'address tag' delivering recycling endosome membranes to the cleavage furrow during late cytokinesis (By similarity). May play a role in differentiation during retinal development. (621 aa)
camk4Calcium/calmodulin-dependent protein kinase IV; Belongs to the protein kinase superfamily. (364 aa)
etv5aETS variant transcription factor 5a. (524 aa)
tp73Cellular tumor antigen p53; Acts as a tumor suppressor in many tumor types; induces growth arrest or apoptosis depending on the physiological circumstances and cell type. Involved in cell cycle regulation as a trans-activator that acts to negatively regulate cell division by controlling a set of genes required for this process. One of the activated genes is an inhibitor of cyclin-dependent kinases. Apoptosis induction seems to be mediated either by stimulation of BAX and FAS antigen expression, or by repression of Bcl-2 expression; Belongs to the p53 family. (640 aa)
dnmt3bb.2DNA (cytosine-5-)-methyltransferase 3 beta, duplicate b.2; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. (1448 aa)
nr2e3Nuclear receptor subfamily 2, group E, member 3. (426 aa)
her8aHairy-related 8a. (221 aa)
nrarpaNotch-regulated ankyrin repeat-containing protein A; Regulates independently canonical Wnt and Notch signaling by modulating LEF1 and Notch protein turnover. Stabilizes LEF1, a pivotal transcription factor in the Wnt signaling cascade, by blocking its ubiquitination. Involved in angiogenesis; involved in intersegmental vessel patterning during development; Belongs to the NRARP family. (112 aa)
notch2Notch receptor 2. (2475 aa)
grnaGranulin a. (1049 aa)
lef1Lymphocyte enhancer binding factor 1 Lef1. (365 aa)
htr1ab5-hydroxytryptamine (serotonin) receptor 1A b. (413 aa)
wnt8aProtein Wnt-8a; Ligand for members of the frizzled family of seven transmembrane receptors. Plays a role in embryonic patterning. May be involved in the specification of the spatial patterns of expression of Gsc and other regulatory genes leading to the establishment of the embryonic axis; Belongs to the Wnt family. (387 aa)
cdh6Cadherin 6; Cadherins are calcium-dependent cell adhesion proteins. (794 aa)
adamts9ADAM metallopeptidase with thrombospondin type 1 motif, 9. (1461 aa)
zgc:153115Zgc:153115. (250 aa)
diras1bDIRAS family, GTP-binding RAS-like 1b. (198 aa)
il7rInterleukin 7 receptor. (372 aa)
nfil3Nuclear factor interleukin-3-regulated protein; May act as a transcriptional regulator of a number of proteins of the circadian clock. (468 aa)
kdm6bbLysine (K)-specific demethylase 6B, b. (1719 aa)
plcg1Phosphoinositide phospholipase C. (1020 aa)
pld1aPhospholipase. (1022 aa)
prpf8Pre-mRNA-processing factor 8. (2342 aa)
hcfc1bHost cell factor C1b. (1993 aa)
birc5bBaculoviral IAP repeat-containing 5b. (144 aa)
wnt16Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (356 aa)
cox5aaCytochrome c oxidase subunit 5Aa. (141 aa)
kmt2aHistone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. TRX/MLL subfamily. (4218 aa)
sbdsSBDS ribosome maturation factor. (250 aa)
metMET proto-oncogene, receptor tyrosine kinase. (1382 aa)
gckrGlucokinase (hexokinase 4) regulator. (281 aa)
tal2T-cell acute lymphocytic leukemia 2. (109 aa)
wdr43WD repeat domain 43. (650 aa)
disc1DISC1 scaffold protein. (994 aa)
shhaSonic hedgehog protein A N-product; Sonic hedgehog protein: The C-terminal part of the sonic hedgehog protein precursor displays an autoproteolysis and a cholesterol transferase activity (By similarity). Both activities result in the cleavage of the full-length protein into two parts (ShhN and ShhC) followed by the covalent attachment of a cholesterol moiety to the C-terminal of the newly generated ShhN (By similarity). Both activities occur in the reticulum endoplasmic (By similarity). Once cleaved, ShhC is degraded in the endoplasmic reticulum (By similarity). (418 aa)
top3aDNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (998 aa)
ap2a1AP-2 complex subunit alpha; Component of the adaptor protein complex 2 (AP-2). Adaptor protein complexes function in protein transport via transport vesicles in different membrane traffic pathways. Adaptor protein complexes are vesicle coat components and appear to be involved in cargo selection and vesicle formation. AP-2 is involved in clathrin-dependent endocytosis in which cargo proteins are incorporated into vesicles surrounded by clathrin (clathrin-coated vesicles, CCVs) which are destined for fusion with the early endosome. The clathrin lattice serves as a mechanical scaffold bu [...] (959 aa)
cdc73Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae). (530 aa)
med12Mediator of RNA polymerase II transcription subunit 12; Component of the Mediator complex, a coactivator involved in regulated gene transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors (By similarity). Require [...] (2175 aa)
ndrg4NDRG family member 4. (352 aa)
nrg1Neuregulin 1. (730 aa)
nbeal2Neurobeachin-like protein 2; Involved in thrombopoiesis. Plays a role in the development or secretion of alpha-granules, that contain several growth factors important for platelet biogenesis; Belongs to the WD repeat neurobeachin family. (2788 aa)
agtpbp1Cytosolic carboxypeptidase 1; Metallocarboxypeptidase that mediates deglutamylation of target proteins. Catalyzes the deglutamylation of polyglutamate side chains generated by post-translational polyglutamylation in proteins such as tubulins. Also removes gene-encoded polyglutamates from the carboxy-terminus of target proteins. Acts as a long-chain deglutamylase and specifically shortens long polyglutamate chains, while it is not able to remove the branching point glutamate. (1153 aa)
dnerDelta/notch-like EGF repeat-containing. (744 aa)
jak2aTyrosine-protein kinase. (1095 aa)
mib1E3 ubiquitin-protein ligase mib1; E3 ubiquitin-protein ligase that mediates ubiquitination of Delta receptors, which act as ligands of Notch proteins. Positively regulates the Delta-mediated Notch signaling by ubiquitinating the intracellular domain of Delta, leading to endocytosis of Delta receptors. It thereby participates in many processes regulated by the Notch signaling pathway, such as midline cell fate specification prior to germ layer formation, patterning of sensory cell differentiation in the ear, neurogenesis of the hindbrain and commitment to a secretory fate in the intesti [...] (1041 aa)
kif3bKinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (775 aa)
sufuSuppressor of fused homolog. (485 aa)
agrnAgrin. (1926 aa)
cdh4Cadherin 4, type 1, R-cadherin (retinal); Cadherins are calcium-dependent cell adhesion proteins. (931 aa)
bmp5Bone morphogenetic protein 5. (446 aa)
lama1Laminin, alpha 1. (3075 aa)
restRE1-silencing transcription factor; Transcriptional repressor which binds neuron-restrictive silencer element (NRSE) and represses neuronal gene transcription in non-neuronal cells. (854 aa)
tfr1aTransferrin receptor 1a. (770 aa)
scn5labSodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient. (1954 aa)
pepdPeptidase D. (496 aa)
irx1aIroquois homeobox protein 1, a. (426 aa)
eps15l1bEpidermal growth factor receptor pathway substrate 15 like 1. (535 aa)
snw1SNW domain-containing 1. (536 aa)
cox5abCytochrome c oxidase subunit 5Ab. (138 aa)
krit1Krev interaction trapped protein 1; Component of the CCM signaling pathway which is a crucial regulator of heart and vessel formation and integrity. Negative regulator of angiogenesis. Inhibits endothelial proliferation, apoptosis, migration, lumen formation and sprouting angiogenesis in primary endothelial cells. Plays a role in integrin signaling. Plays an important role in the maintenance of the intracellular reactive oxygen species (ROS) homeostasis to prevent oxidative cellular damage. Facilitates the down-regulation of cyclin-D1 (CCND1) levels required for cell transition from pr [...] (741 aa)
apcAPC regulator of WNT-signaling pathway. (2754 aa)
nop14NOP14 nucleolar protein homolog (yeast). (767 aa)
rbpmsRNA-binding protein, mRNA-processing factor. (160 aa)
sf3a3Splicing factor 3a, subunit 3. (501 aa)
smarcal1SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1; ATP-dependent annealing helicase that catalyzes the rewinding of the stably unwound DNA. Rewinds single-stranded DNA bubbles that are stably bound by replication protein A (RPA). Acts throughout the genome to reanneal stably unwound DNA, performing the opposite reaction of many enzymes, such as helicases and polymerases, that unwind DNA (By similarity); Belongs to the SNF2/RAD54 helicase family. SMARCAL1 subfamily. (398 aa)
halHistidine ammonia-lyase; Belongs to the PAL/histidase family. (654 aa)
dnajb1aDnaJ heat shock protein family (Hsp40) member B1a. (335 aa)
iqcgDynein regulatory complex protein 9; Component of the nexin-dynein regulatory complex (N-DRC), a key regulator of ciliary/flagellar motility which maintains the alignment and integrity of the distal axoneme and regulates microtubule sliding in motile axonemes (By similarity). Binds calmodulin when cellular Ca(2+) levels are low and thereby contributes to the regulation of calcium and calmodulin-dependent protein kinase IV (camk4) activity; contributes to the regulation of camk4 signaling cascades. Plays a role in the regulation of definitive hematopoiesis via its effects on camk4. Belo [...] (346 aa)
trpm7Transient receptor potential cation channel, subfamily M, member 7. (1787 aa)
tcf7l1bTranscription factor 7-like 1-B; Participates in the Wnt signaling pathway. Probably binds to DNA and acts as a repressor in the absence of ctnnb1, and possibly as an activator in its presence. Regulates anterior-posterior patterning in the neuroectoderm by repressing posterior neural fates. Also required for hindbrain morphogenesis. Belongs to the TCF/LEF family. (585 aa)
csf1raMacrophage colony-stimulating factor 1 receptor; Tyrosine-protein kinase that acts as cell-surface receptor for CSF1 and plays an essential role in the regulation of survival, proliferation and differentiation of hematopoietic precursor cells, especially mononuclear phagocytes, such as macrophages and monocytes. Plays an important role in innate immunity and in inflammatory processes. Plays an important role in the regulation of osteoclast proliferation and differentiation, the regulation of bone resorption, and is required for normal bone development. Promotes reorganization of the ac [...] (977 aa)
lpar3Lysophosphatidic acid receptor 3; Belongs to the G-protein coupled receptor 1 family. (353 aa)
npas4lNeuronal PAS domain-containing protein 4-like; Transcription factor specifically expressed in endothelial and hematopoietic precursor cells that acts as a key regulator of the endothelial differentiation cascade. Acts as an early-response transcription factor that regulates the expression of early regulators of endothelial and haematopoietic differentiation, such as etv2 and tal1. (658 aa)
pax6bPaired box 6b. (450 aa)
cdx1bCaudal type homeodomain protein. (255 aa)
tfap2aTranscription factor AP-2 alpha. (450 aa)
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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