17 items (Danio rerio) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
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Predicted Interactions

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Your Input:
	ush1ga	Usher syndrome 1Ga (autosomal recessive). (472 aa)
	chm	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane. (666 aa)
	cdh23	Cadherin-related 23. (2883 aa)
	s1pr2	Sphingosine 1-phosphate receptor 2; Receptor for the lysosphingolipid sphingosine 1-phosphate (S1P). S1P receptor is critical for cell migration and epithelial integrity during vertebrate embryogenesis. Receptor for the chemokine-like protein FAM19A5 (By similarity). Mediates the inhibitory effect of FAM19A5 on vascular smooth muscle cell proliferation and migration (By similarity). (370 aa)
	dcdc2b	Doublecortin domain-containing 2B. (447 aa)
	atp2b1a	Calcium-transporting ATPase; This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium. (1228 aa)
	tecta	Tectorin alpha. (2201 aa)
	kremen1	Kringle-containing transmembrane protein 1. (465 aa)
	get1	Tail-anchored protein insertion receptor WRB; Receptor for ASNA1/TRC40-mediated insertion of tail-anchored (TA) proteins into the ER membrane. (170 aa)
	ush1c	Usher syndrome 1C (Autosomal recessive, severe). (548 aa)
	pax5	Paired box 5. (396 aa)
	eya1	Eyes absent homolog; Belongs to the HAD-like hydrolase superfamily. EYA family. (609 aa)
	ap1b1	AP complex subunit beta. (947 aa)
	slc26a2	Sulfate transporter; Sulfate transporter. May play a role in endochondral bone formation; Belongs to the SLC26A/SulP transporter (TC 2.A.53) family. (699 aa)
	grhl1	Grainyhead-like transcription factor 1. (613 aa)
	pcdh15a	Protocadherin-related 15a. (1796 aa)
	grxcr1a	Glutaredoxin and cysteine-rich domain-containing 1 a. (295 aa)

Your Current Organism:

Danio rerio

NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ap1b1	cdh23	ENSDARP00000122116	ENSDARP00000026525	AP complex subunit beta.	Cadherin-related 23.	0.563
cdh23	ap1b1	ENSDARP00000026525	ENSDARP00000122116	Cadherin-related 23.	AP complex subunit beta.	0.563
cdh23	pcdh15a	ENSDARP00000026525	ENSDARP00000130788	Cadherin-related 23.	Protocadherin-related 15a.	0.996
cdh23	ush1c	ENSDARP00000026525	ENSDARP00000104974	Cadherin-related 23.	Usher syndrome 1C (Autosomal recessive, severe).	0.999
cdh23	ush1ga	ENSDARP00000026525	ENSDARP00000007488	Cadherin-related 23.	Usher syndrome 1Ga (autosomal recessive).	0.518
pcdh15a	cdh23	ENSDARP00000130788	ENSDARP00000026525	Protocadherin-related 15a.	Cadherin-related 23.	0.996
pcdh15a	ush1c	ENSDARP00000130788	ENSDARP00000104974	Protocadherin-related 15a.	Usher syndrome 1C (Autosomal recessive, severe).	0.986
pcdh15a	ush1ga	ENSDARP00000130788	ENSDARP00000007488	Protocadherin-related 15a.	Usher syndrome 1Ga (autosomal recessive).	0.649
ush1c	cdh23	ENSDARP00000104974	ENSDARP00000026525	Usher syndrome 1C (Autosomal recessive, severe).	Cadherin-related 23.	0.999
ush1c	pcdh15a	ENSDARP00000104974	ENSDARP00000130788	Usher syndrome 1C (Autosomal recessive, severe).	Protocadherin-related 15a.	0.986
ush1c	ush1ga	ENSDARP00000104974	ENSDARP00000007488	Usher syndrome 1C (Autosomal recessive, severe).	Usher syndrome 1Ga (autosomal recessive).	0.878
ush1ga	cdh23	ENSDARP00000007488	ENSDARP00000026525	Usher syndrome 1Ga (autosomal recessive).	Cadherin-related 23.	0.518
ush1ga	pcdh15a	ENSDARP00000007488	ENSDARP00000130788	Usher syndrome 1Ga (autosomal recessive).	Protocadherin-related 15a.	0.649
ush1ga	ush1c	ENSDARP00000007488	ENSDARP00000104974	Usher syndrome 1Ga (autosomal recessive).	Usher syndrome 1C (Autosomal recessive, severe).	0.878

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