STRINGSTRING
nsd2 nsd2 prdm1a prdm1a sox9a sox9a gpc4 gpc4 cpsf4 cpsf4 gli2a gli2a dlx1a dlx1a usp20 usp20 colec11 colec11 gata3 gata3 dvl2 dvl2 zic2a zic2a frzb frzb eftud2 eftud2 faf1 faf1 sparc sparc tbx1 tbx1 mmp14b mmp14b adarb1a adarb1a fgf10a fgf10a pitx2 pitx2 kmt2d kmt2d smad5 smad5 nr3c1 nr3c1 pkdccb pkdccb pold1 pold1 arl6ip1 arl6ip1 vgll2a vgll2a usp39 usp39 sox9b sox9b disp1 disp1 nansa nansa cnbpa cnbpa rx3 rx3 pax9 pax9 leo1 leo1 foxh1 foxh1 uxs1 uxs1 fgfrl1a fgfrl1a gpatch3 gpatch3 mecom mecom tinagl1 tinagl1 edaradd edaradd kat2b kat2b bap1 bap1 wnt3a wnt3a tcf7l1a tcf7l1a dmrt2b dmrt2b nolc1 nolc1 gria2a gria2a pdgfra pdgfra skib skib uchl3 uchl3 chsy1 chsy1 pdgfaa pdgfaa ahr2 ahr2 tshz2 tshz2 boc boc cyp26b1 cyp26b1 rerea rerea dlx2a dlx2a pappa2 pappa2 usp18 usp18 usp44 usp44 dzip1 dzip1 wnt9a wnt9a fzd7a fzd7a prdm5 prdm5 fgf20b fgf20b cyldb cyldb foxd3 foxd3 prdm16 prdm16 loxl3b loxl3b sp7 sp7 crispld2 crispld2 pknox1.1 pknox1.1 polr1c polr1c enpp1 enpp1 esf1 esf1 macc1 macc1 rbms3 rbms3 kdm6a kdm6a ift80 ift80 specc1lb specc1lb alx1 alx1 tnfaip3 tnfaip3 cylda cylda tgfb2 tgfb2 pcdh19 pcdh19 usp5 usp5 disc1 disc1 col11a2 col11a2 eif3f eif3f ostn ostn nomo nomo gli1 gli1 polr1a polr1a Usp15 Usp15 hmgcrb hmgcrb foxi1 foxi1 wnt5b wnt5b rbm24a rbm24a hdac4 hdac4 ttc8 ttc8 fzd6 fzd6 smchd1 smchd1 capzb capzb esrra esrra msx1a msx1a ndnf ndnf kat2a kat2a tfap2a tfap2a
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
nsd2Nuclear receptor-binding SET domain protein 2. (1461 aa)
prdm1aPR domain-containing 1a, with ZNF domain. (776 aa)
sox9aHMG box transcription factor Sox9a. (462 aa)
gpc4Glypican 4; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family. (557 aa)
cpsf4Cleavage and polyadenylation-specific factor 4. (271 aa)
gli2aGLI family zinc finger 2a. (1439 aa)
dlx1aHomeobox protein Dlx1a. (252 aa)
usp20Ubiquitin carboxyl-terminal hydrolase 20; Deubiquitinating enzyme involved in beta-2 adrenergic receptor (adrb2) recycling. Acts as a regulator of G-protein coupled receptor (GPCR) signaling by mediating the deubiquitination beta-2 adrenergic receptor (adrb2). Plays a central role in adrb2 recycling and resensitization after prolonged agonist stimulation by constitutively binding adrb2, mediating deubiquitination of adrb2 and inhibiting lysosomal trafficking of adrb2. Mediates deubiquitination of both 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains (By similarity); Belongs to the pe [...] (911 aa)
colec11Collectin-11; Lectin that plays a role in innate immunity, apoptosis and embryogenesis. Calcium-dependent lectin that binds self and non-self glycoproteins presenting high mannose oligosaccharides with at least one terminal alpha-1,2-linked mannose epitope. Primarily recognizes the terminal disaccharide of the glycan. Also recognizes a subset of fucosylated glycans and lipopolysaccharides. Plays a role in innate immunity through its ability to bind non-self sugars presented by microorganisms and to activate the complement through the recruitment of MAPS1. Also plays a role in apoptosis [...] (271 aa)
gata3Transcription factor GATA-3. (438 aa)
dvl2Dishevelled segment polarity protein 2. (747 aa)
zic2aZIC family member 2 (Odd-paired homolog, Drosophila), A. (445 aa)
frzbFrizzled-related protein. (315 aa)
eftud2Elongation factor Tu GTP-binding domain-containing 2. (973 aa)
faf1Fas (TNFRSF6)-associated factor 1. (675 aa)
sparcSecreted protein, acidic, cysteine-rich (osteonectin). (291 aa)
tbx1T-box transcription factor TBX1; May act as a transcriptional factor. Acts cell autonomously in the pharyngeal mesendoderm and influences the development of neural crest-derived cartilages secondarily. (460 aa)
mmp14bMatrix metallopeptidase 14b (membrane-inserted). (621 aa)
adarb1aAdenosine deaminase RNA-specific B1a. (720 aa)
fgf10aFibroblast growth factor; Belongs to the heparin-binding growth factors family. (201 aa)
pitx2Pituitary homeobox 2; Isoform a and isoform c differentially regulate mesendoderm formation and asymmetric organ development. Both isoforms regulate left-right development, but isoform a has a stronger effect on heart laterality; Belongs to the paired homeobox family. Bicoid subfamily. (314 aa)
kmt2dLysine (K)-specific methyltransferase 2D. (3325 aa)
smad5Mothers against decapentaplegic homolog 5; Involved in ventralization. May mediate Bmp2b signaling during early phases of embryonic dorsal-ventral pattern formation. Required for initiation of Smad1 expression during gastrulation. Belongs to the dwarfin/SMAD family. (464 aa)
nr3c1Nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor). (746 aa)
pkdccbProtein kinase domain-containing, cytoplasmic b. (481 aa)
pold1DNA polymerase. (1105 aa)
arl6ip1ADP-ribosylation factor-like 6-interacting protein 1. (203 aa)
vgll2aVestigial-like family member 2a. (296 aa)
usp39Ubiquitin-specific peptidase 39. (497 aa)
sox9bHMG box transcription factor Sox9b. (407 aa)
disp1Protein dispatched homolog 1; Functions in hedgehog (Hh) signaling. Regulates the release and extracellular accumulation of cholesterol-modified hedgehog proteins and is hence required for effective production of the Hh signal. Synergizes with SCUBE2 to cause an increase in SHH secretion (By similarity); Belongs to the dispatched family. (1464 aa)
nansaN-acetylneuraminic acid synthase a. (359 aa)
cnbpaCCHC-type zinc finger, nucleic acid-binding protein a. (163 aa)
rx3Retinal homeobox protein Rx3; Plays a critical role in eye formation by regulating the initial specification of retinal cells and/or their subsequent proliferation. (292 aa)
pax9Paired box 9. (343 aa)
leo1RNA polymerase-associated protein LEO1; Component of the PAF1 complex (PAF1C) which has multiple functions during transcription by RNA polymerase II. PAF1C associates with RNA polymerase II, is involved in transcriptional elongation and in histone modifications including methylation on histone H3 'Lys-4' (H3K4me3) (By similarity). PAF1C seems to be required for multiple steps in cardiac formation. Involved in heart development and required for differentiation of the atrioventricular boundary. Required for neural crest cell development. (696 aa)
foxh1Forkhead box protein H1; Transcriptional activator. Activates an activin response element (ARE). Recognizes and binds to the DNA sequence 5'- TGT[GT][GT]ATT-3'. Modulator of nodal signaling required for organizer formation. Also required for the development of dorsal axial structures and left-right symmetry. (472 aa)
uxs1UDP-glucuronic acid decarboxylase 1; Catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid to UDP-xylose. Necessary for the biosynthesis of the core tetrasaccharide in glycosaminoglycan biosynthesis (By similarity). Essential during embryogenesis for craniofacial development. Belongs to the NAD(P)-dependent epimerase/dehydratase family. UDP-glucuronic acid decarboxylase subfamily. (418 aa)
fgfrl1aFibroblast growth factor receptor-like 1a. (483 aa)
gpatch3G patch domain-containing 3. (669 aa)
mecomMDS1 and EVI1 complex locus. (766 aa)
tinagl1Tubulointerstitial nephritis antigen-like 1; Belongs to the peptidase C1 family. (471 aa)
edaraddEDAR-associated death domain. (219 aa)
kat2bHistone acetyltransferase KAT2B; Functions as a histone acetyltransferase (HAT) to promote transcriptional activation (By similarity). Has significant histone acetyltransferase activity with core histones (H3 and H4), and also with nucleosome core particles (By similarity). Also acetylates non- histone proteins. Involved in heart and limb development by mediating acetylation of tbx5. Also acetylates spermidine (By similarity). Together with kat2a, required for growth and differentiation of craniofacial cartilage and bone by regulating acetylation of histone H3 at 'Lys-9' (H3K9ac) ; Bel [...] (796 aa)
bap1Ubiquitin carboxyl-terminal hydrolase BAP1; Deubiquitinating enzyme that plays a key role in chromatin by mediating deubiquitination of histone H2A. Catalytic component of the PR-DUB complex, a complex that specifically mediates deubiquitination of histone H2A monoubiquitinated at 'Lys-119' (H2AK119ub1) (By similarity). (755 aa)
wnt3aProtein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (365 aa)
tcf7l1aTranscription factor 7-like 1-A; Participates in the Wnt signaling pathway. Probably binds to DNA and acts as a repressor in the absence of ctnnb1, and possibly as an activator in its presence. Required early in development for dorsal specific gene activation and during gastrulation for repression of dorsal-specific genes in the marginal zone. Required for head formation and forebrain specification. Regulates anterior-posterior patterning in the neuroectoderm by repressing posterior neural fates. Belongs to the TCF/LEF family. (560 aa)
dmrt2bDoublesex and mab-3-related transcription factor 2b. (364 aa)
nolc1Nucleolar and coiled-body phosphoprotein 1. (1001 aa)
gria2aGlutamate receptor, ionotropic, AMPA 2a. (875 aa)
pdgfraPlatelet-derived growth factor receptor alpha; Tyrosine-protein kinase that acts as a cell-surface receptor for pdgfa, pdgfb and pdgfc and plays an essential role in the regulation of embryonic development, cell proliferation, survival and chemotaxis. Depending on the context, promotes or inhibits cell proliferation and cell migration. Plays an important role in the differentiation of bone marrow-derived mesenchymal stem cells. Required for normal skeleton development. Required for normal development of the gastrointestinal tract. Plays a role in cell migration and chemotaxis in wound [...] (1456 aa)
skibV-ski avian sarcoma viral oncogene homolog b. (695 aa)
uchl3Ubiquitin carboxyl-terminal hydrolase. (230 aa)
chsy1Hexosyltransferase. (801 aa)
pdgfaaPlatelet-derived growth factor alpha polypeptide a; Belongs to the PDGF/VEGF growth factor family. (194 aa)
ahr2Aryl hydrocarbon receptor 2. (1027 aa)
tshz2Teashirt zinc finger homeobox 2. (1020 aa)
bocBOC cell adhesion-associated, oncogene-regulated. (1032 aa)
cyp26b1Cytochrome P450 26B1; Involved in the metabolism of retinoic acid (RA), rendering this classical morphogen inactive through oxidation. Appears to be involved in the inactivation of all-trans-retinoic acid (RA). Plays a role in skeletal development; Belongs to the cytochrome P450 family. (511 aa)
rereaArginine-glutamic acid dipeptide (RE) repeats a. (1531 aa)
dlx2aHomeobox protein Dlx2a; Involved in the development of the inner ear; Belongs to the distal-less homeobox family. (274 aa)
pappa2Pappalysin 2. (1731 aa)
usp18Ubiquitin-specific peptidase 18; Belongs to the peptidase C19 family. (337 aa)
usp44Ubiquitin carboxyl-terminal hydrolase 44; Deubiquitinase that plays a key role in the spindle assembly checkpoint by preventing premature anaphase onset. Acts by specifically mediating deubiquitination of cdc20, a negative regulator of the anaphase promoting complex/cyclosome (APC/C) (By similarity). (695 aa)
dzip1Zinc finger protein Dzip1; Acts as a permissive factor that is required for the proper regulation of Hedgehog (Hh) target genes in response to Hh signals. Acts downstream of the Smoothened protein to modulate Gli activity in the somites of the developing embryo. Required for establishment of left-right asymmetry during embryogenesis. Has a role in primary cilium formation. (897 aa)
wnt9aProtein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (363 aa)
fzd7aFrizzled class receptor 7a; Belongs to the G-protein coupled receptor Fz/Smo family. (559 aa)
prdm5PR domain-containing 5. (634 aa)
fgf20bFibroblast growth factor; Belongs to the heparin-binding growth factors family. (208 aa)
cyldbCylindromatosis (turban tumor syndrome), b. (694 aa)
foxd3Forkhead box D3. (371 aa)
prdm16Si:ch211-263k4.2. (927 aa)
loxl3bLysyl oxidase homolog 3B; Protein-lysine 6-oxidase that mediates the oxidation of peptidyl lysine residues to allysine in target proteins (By similarity). Catalyzes the post-translational oxidative deamination of peptidyl lysine residues in precursors of elastin and different types of collagens, a prerequisite in the formation of cross-links between collagens and elastin (By similarity). Can mediate oxidation of lysine residues that are acetylated (By similarity). Also able to catalyze deacetylation of lysine residues (By similarity). Required for maturation of neural crest derived car [...] (807 aa)
sp7Sp7 transcription factor. (528 aa)
crispld2Cysteine-rich secretory protein LCCL domain-containing 2. (512 aa)
pknox1.1Homeodomain transcription factor Prep1. (433 aa)
polr1cRNA polymerase I and III subunit C. (362 aa)
enpp1Ectonucleotide pyrophosphatase/phosphodiesterase 1. (878 aa)
esf1ESF1, nucleolar pre-rRNA-processing protein, homolog (S. cerevisiae). (757 aa)
macc1MET transcriptional regulator MACC1. (853 aa)
rbms3RNA-binding motif, single stranded-interacting protein. (409 aa)
kdm6aLysine (K)-specific demethylase 6A. (1390 aa)
ift80Intraflagellar transport 80 homolog (Chlamydomonas). (777 aa)
specc1lbSperm antigen with calponin homology and coiled-coil domains 1-like b. (1121 aa)
alx1ALX homeobox protein 1; Sequence-specific DNA-binding transcription factor that binds palindromic sequences within promoters and may activate or repress the transcription of a subset of genes. Most probably regulates the expression of genes involved in the development of mesenchyme-derived craniofacial structures (By similarity). Required for proper neural crest cell migration into the frontonasal primordia during development ; Belongs to the paired homeobox family. (320 aa)
tnfaip3Tumor necrosis factor, alpha-induced protein 3. (756 aa)
cyldaCylindromatosis (turban tumor syndrome), a; Belongs to the peptidase C19 family. (951 aa)
tgfb2Transforming growth factor, beta 2. (413 aa)
pcdh19Protocadherin 19. (1088 aa)
usp5Ubiquitin carboxyl-terminal hydrolase. (834 aa)
disc1DISC1 scaffold protein. (994 aa)
col11a2Collagen, type XI, alpha 2. (1803 aa)
eif3fEukaryotic translation initiation factor 3, subunit F; Belongs to the eIF-3 subunit F family. (282 aa)
ostnOsteocrin. (134 aa)
nomoNodal modulator. (1208 aa)
gli1GLI family zinc finger 1. (1404 aa)
polr1aDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1693 aa)
Usp15DUSP domain-containing protein. (143 aa)
hmgcrb3-hydroxy-3-methylglutaryl coenzyme A reductase. (844 aa)
foxi1Forkhead box I1. (377 aa)
wnt5bProtein Wnt-5b; Ligand for members of the frizzled family of seven transmembrane receptors. Can activate or inhibit canonical Wnt signaling, depending on receptor context. Required during embryogenesis for extension of the primary anterior-posterior axis. (363 aa)
rbm24aRNA-binding protein 24; Multifunctional RNA-binding protein involved in the regulation of pre-mRNA splicing, mRNA stability and mRNA translation important for cell fate decision and differentiation. Plays a major role in pre-mRNA alternative splicing regulation. Mediates preferentially muscle-specific exon inclusion in numerous mRNAs important for striated cardiac and skeletal muscle cell differentiation. Binds to intronic splicing enhancer (ISE) composed of stretches of GU-rich motifs localized in flanking intron of exon that will be included by alternative splicing. Involved in embry [...] (230 aa)
hdac4Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. (1023 aa)
ttc8Tetratricopeptide repeat domain 8. (268 aa)
fzd6Frizzled class receptor 6; Belongs to the G-protein coupled receptor Fz/Smo family. (617 aa)
smchd1Structural maintenance of chromosomes flexible hinge domain-containing 1. (1983 aa)
capzbF-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments. (273 aa)
esrraEstrogen-related receptor alpha. (436 aa)
msx1aMuscle segment homeobox 1a. (233 aa)
ndnfNeuron-derived neurotrophic factor. (585 aa)
kat2aHistone acetyltransferase KAT2A; Protein lysine acyltransferase that can act as a acetyltransferase, glutaryltransferase or succinyltransferase, depending on the context (By similarity). Acts as a histone lysine succinyltransferase: catalyzes succinylation of histone H3 on 'Lys-79' (H3K79succ), with a maximum frequency around the transcription start sites of genes (By similarity). Succinylation of histones gives a specific tag for epigenetic transcription activation (By similarity). Association with the 2-oxoglutarate dehydrogenase complex, which provides succinyl-CoA, is required for [...] (819 aa)
tfap2aTranscription factor AP-2 alpha. (450 aa)
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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