STRINGSTRING
esco2 esco2 mmp2 mmp2 ptf1a ptf1a smo smo fat1b fat1b gli2b gli2b snx5 snx5 mmp14a mmp14a sfpq sfpq ptch1 ptch1 rbpja rbpja pes pes slitrk2 slitrk2 itga5 itga5 vsx2 vsx2 itgb1a itgb1a xirp1 xirp1 dctn2 dctn2 mpp6b mpp6b vps11 vps11 egr1 egr1 cln3 cln3 lamb4 lamb4 utp11 utp11 myo6b myo6b cadm1b cadm1b nphp1 nphp1 pou5f3 pou5f3 gdf6a gdf6a pax2a pax2a sec13 sec13 id2a id2a tgif1 tgif1 ranbp9 ranbp9 sypb sypb cadm2b cadm2b abhd11 abhd11 timp2b timp2b itga6b itga6b stat3 stat3 nav1b nav1b mak16 mak16 sox10 sox10 cdhr1a cdhr1a apcdd1l apcdd1l twistnb twistnb prmt6 prmt6 csnk1a1 csnk1a1 gnl3 gnl3 cadm4 cadm4 dcaf8 dcaf8 vwc2 vwc2 cadm1a cadm1a ppp1r12a ppp1r12a snx19a snx19a cux2b cux2b icn2 icn2 wt1b wt1b epb41l5 epb41l5 lamb2 lamb2 mpp5a mpp5a kirrel1a kirrel1a kmt2a kmt2a apobec2a apobec2a hepacama hepacama syne2a syne2a kcnj13 kcnj13 map1ab map1ab sptbn5 sptbn5 f8 f8 lamb1a lamb1a mib1 mib1 cacnb2a cacnb2a nfat5b nfat5b wnt5b wnt5b irx1a irx1a pde6c pde6c vwde vwde gnl2 gnl2 rnaset2 rnaset2 Reln Reln dctn1a dctn1a apobec2b apobec2b mmp28 mmp28 nphs1 nphs1
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
esco2N-acetyltransferase ESCO2; Acetyltransferase required for the establishment of sister chromatid cohesion. Couples the processes of cohesion and DNA replication to ensure that only sister chromatids become paired together (By similarity). Essential for early development. (609 aa)
mmp2Matrix metalloproteinase 2. (657 aa)
ptf1aPancreas transcription factor 1 subunit alpha; Transcription factor implicated in the cell fate determination in various organs. Binds to the E-box consensus sequence 5'-CANNTG-3'. Required for exocrine pancreatic development. Plays a central role in directing the differentiation of retinal progenitors towards horizontal and amacrine fates. (265 aa)
smoSmoothened, frizzled class receptor; Belongs to the G-protein coupled receptor Fz/Smo family. (822 aa)
fat1bFAT atypical cadherin 1b. (4503 aa)
gli2bGLI family zinc finger 2b. (1225 aa)
snx5Sorting nexin; Involved in several stages of intracellular trafficking. Belongs to the sorting nexin family. (399 aa)
mmp14aMatrix metallopeptidase 14a (membrane-inserted). (574 aa)
sfpqSplicing factor proline/glutamine-rich. (638 aa)
ptch1Protein patched homolog 1. (1475 aa)
rbpjaRecombination signal-binding protein for immunoglobulin kappa J region a. (496 aa)
pesPescadillo; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (583 aa)
slitrk2SLIT and NTRK-like family, member 2. (854 aa)
itga5Integrin, alpha 5 (fibronectin receptor, alpha polypeptide); Belongs to the integrin alpha chain family. (1053 aa)
vsx2Visual system homeobox 2; Acts as a transcriptional regulator (By similarity). Mediates the differentiation of V2a interneurons (By similarity). Plays a role in eye development and organization of the neuroretina. (372 aa)
itgb1aIntegrin beta; Belongs to the integrin beta chain family. (798 aa)
xirp1Xin actin-binding repeat-containing protein 1; Protects actin filaments from depolymerization. Belongs to the Xin family. (2297 aa)
dctn2Dynactin subunit 2; Modulates cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organization during mitosis. Involved in anchoring microtubules to centrosomes. May play a role in synapse formation during brain development (By similarity). (405 aa)
mpp6bMembrane protein, palmitoylated 6b (MAGUK p55 subfamily member 6); Belongs to the MAGUK family. (539 aa)
vps11Vacuolar protein sorting-associated protein 11 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS11 family. (927 aa)
egr1Early growth response protein 1; Transcriptional regulator. Recognizes and binds to the DNA sequence 5'-GCG(T/G)GGGCG-3'(EGR-site) in the promoter region of target genes (By similarity). Binds double-stranded target DNA, irrespective of the cytosine methylation status (By similarity). Regulates the transcription of numerous target genes, and thereby plays an important role in regulating the response to growth factors, DNA damage, and ischemia. Plays a role in the regulation of cell survival, proliferation and cell death. Mediates responses to ischemia and hypoxia; regulates the express [...] (511 aa)
cln3Battenin. (446 aa)
lamb4Laminin subunit beta-4; Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organization of cells into tissues during embryonic development by interacting with other extracellular matrix components. (1827 aa)
utp11U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (250 aa)
myo6bMyosin VIb; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1267 aa)
cadm1bCell adhesion molecule 1b. (370 aa)
nphp1Nephronophthisis 1. (667 aa)
pou5f3POU domain, class 5, transcription factor 1; Involved in early development of embryos, especially in the process of gastrulation. May play an important role in establishing and specifying rhombomeric segments. Seems to be required to maintain the cells in a highly undifferentiated state. In contrast to POU2, T-POU2 lacks DNA-binding activity because of its incomplete pou domain structure. Overexpression of POU2 does not have any effect on development, whereas overexpression of t-POU2 causes developmental retardation or arrest before gastrulation; Belongs to the POU transcription factor [...] (472 aa)
gdf6aGrowth/differentiation factor 6-A; Growth factor that controls proliferation and cellular differentiation in the retina. Plays a key role in regulating apoptosis during retinal development. Establishes dorsal-ventral positional information in the retina and controls the formation of the retinotectal map. Functions maternally in dorsal/ventral patterning to induce the expression of the zygotic bmp2b and bmp4 genes and ventralize embryos. Zygotic expression does not appear to regulate axis specification, but instead functions to establish the integrity of the axial vessels during embryon [...] (404 aa)
pax2aPaired box protein Pax-2a; Probable transcription factor involved in the development of the midbrain/hindbrain boundary (MHB) organizer and specification of neuronal cell fates. Required for establishment of eng2 and eng3 gene expression in the midbrain and MHB primordium during late gastrulation. (391 aa)
sec13SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family. (320 aa)
id2aInhibitor of DNA binding 2, dominant negative helix-loop-helix protein, a. (137 aa)
tgif1TGFB-induced factor homeobox 1. (273 aa)
ranbp9Ran-binding protein 9; May act as scaffolding protein, and as adapter protein to couple membrane receptors to intracellular signaling pathways. Acts as a mediator of cell spreading and actin cytoskeleton rearrangement. Core component of the CTLH E3 ubiquitin-protein ligase complex that mediates ubiquitination and subsequent proteasomal degradation of target proteins. (597 aa)
sypbSynaptophysin b. (297 aa)
cadm2bCell adhesion molecule 2b. (381 aa)
abhd11Protein ABHD11; Belongs to the AB hydrolase superfamily. (317 aa)
timp2bTIMP metallopeptidase inhibitor 2b. (265 aa)
itga6bIntegrin, alpha 6b; Belongs to the integrin alpha chain family. (1085 aa)
stat3Signal transducer and activator of transcription. (806 aa)
nav1bNeuron navigator 1b. (1790 aa)
mak16Protein MAK16 homolog; Plays an essential role in early embryonic development. (305 aa)
sox10HMG-box transcription factor Sox10. (485 aa)
cdhr1aCadherin-related family member 1; Potential calcium-dependent cell-adhesion protein. (857 aa)
apcdd1lAdenomatosis polyposis coli down-regulated 1-like. (512 aa)
twistnbDNA-directed RNA polymerase I subunit RPA43; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerase I which synthesizes ribosomal RNA precursors. May be involved in recruitment of Pol I to rDNA promoters (By similarity). (390 aa)
prmt6Protein arginine N-methyltransferase 6; Arginine methyltransferase that can catalyze the formation of both omega-N monomethylarginine (MMA) and asymmetrical dimethylarginine (aDMA), with a strong preference for the formation of aDMA. Preferentially methylates arginyl residues present in a glycine and arginine-rich domain and displays preference for monomethylated substrates. Specifically mediates the asymmetric dimethylation of histone H3 'Arg-2' to form H3R2me2a. H3R2me2a represents a specific tag for epigenetic transcriptional repression and is mutually exclusive with methylation on [...] (355 aa)
csnk1a1Casein kinase 1, alpha 1; Belongs to the protein kinase superfamily. (365 aa)
gnl3Guanine nucleotide-binding protein-like 3; May play a role in regulating cellular proliferation. (561 aa)
cadm4Cell adhesion molecule 4. (413 aa)
dcaf8DDB1 and CUL4-associated factor 8. (607 aa)
vwc2Von Willebrand factor C domain-containing 2. (309 aa)
cadm1aCell adhesion molecule 1a. (447 aa)
ppp1r12aProtein phosphatase 1 regulatory subunit 12A; Regulates myosin phosphatase activity. (1117 aa)
snx19aSorting nexin 19a. (883 aa)
cux2bHomeobox protein cut-like. (1356 aa)
icn2Protein S100; Belongs to the S-100 family. (97 aa)
wt1bWT1 transcription factor b. (412 aa)
epb41l5Erythrocyte membrane protein band 4.1-like 5. (461 aa)
lamb2Laminin, beta 2 (laminin S). (1782 aa)
mpp5aMAGUK p55 subfamily member 5-A; Plays a role in tight junction biogenesis and in the establishment of cell polarity in epithelial cells (By similarity). Also involved in adherens junction biogenesis (By similarity). Functions in cellular patterning of the retina. (703 aa)
kirrel1aKirre-like nephrin family adhesion molecule 1a. (807 aa)
kmt2aHistone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. TRX/MLL subfamily. (4218 aa)
apobec2aApolipoprotein B mRNA-editing enzyme, catalytic polypeptide-like 2a. (266 aa)
hepacamaHepatic and glial cell adhesion molecule a. (451 aa)
syne2aSi:ch211-207i1.2. (8864 aa)
kcnj13Potassium inwardly rectifying channel subfamily J member 13. (362 aa)
map1abMicrotubule-associated protein 1Ab. (3737 aa)
sptbn5Spectrin, beta, non-erythrocytic 5. (4140 aa)
f8Coagulation factor VIII, procoagulant component. (1674 aa)
lamb1aLaminin, beta 1a. (1785 aa)
mib1E3 ubiquitin-protein ligase mib1; E3 ubiquitin-protein ligase that mediates ubiquitination of Delta receptors, which act as ligands of Notch proteins. Positively regulates the Delta-mediated Notch signaling by ubiquitinating the intracellular domain of Delta, leading to endocytosis of Delta receptors. It thereby participates in many processes regulated by the Notch signaling pathway, such as midline cell fate specification prior to germ layer formation, patterning of sensory cell differentiation in the ear, neurogenesis of the hindbrain and commitment to a secretory fate in the intesti [...] (1041 aa)
cacnb2aCalcium channel, voltage-dependent, beta 2a. (636 aa)
nfat5bNuclear factor of-activated T cells 5b. (1257 aa)
wnt5bProtein Wnt-5b; Ligand for members of the frizzled family of seven transmembrane receptors. Can activate or inhibit canonical Wnt signaling, depending on receptor context. Required during embryogenesis for extension of the primary anterior-posterior axis. (363 aa)
irx1aIroquois homeobox protein 1, a. (426 aa)
pde6cPhosphodiesterase. (852 aa)
vwdeVon Willebrand factor D and EGF domains. (212 aa)
gnl2Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily. (726 aa)
rnaset2Ribonuclease T2; Has ribonuclease activity, with higher activity at acidic pH. Probably is involved in lysosomal degradation of ribosomal RNA. (240 aa)
RelnReelin domain-containing protein. (259 aa)
dctn1aDynactin 1a. (1257 aa)
apobec2bApolipoprotein B mRNA-editing enzyme, catalytic polypeptide-like 2b. (273 aa)
mmp28Matrix metallopeptidase 28. (501 aa)
nphs1NPHS1 adhesion molecule, nephrin. (1287 aa)
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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