37 items (Danio rerio) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M9MM93_DANRE	Si:ch73-211l2.3. (234 aa)
	aicda	Activation-induced cytidine deaminase. (210 aa)
	mhc2a	Major histocompatibility complex class II integral membrane alpha chain gene. (236 aa)
	cxcl12a	Chemokine (C-X-C motif) ligand 12a (stromal cell-derived factor 1); Belongs to the intercrine alpha (chemokine CxC) family. (99 aa)
	tgfb1a	Transforming growth factor beta; Belongs to the TGF-beta family. (377 aa)
	cxcr4b	Chemokine (C-X-C motif), receptor 4b; Belongs to the G-protein coupled receptor 1 family. (353 aa)
	itgb7	Integrin beta; Belongs to the integrin beta chain family. (754 aa)
	cxcl12b	Chemokine (C-X-C motif) ligand 12B (Stromal cell-derived factor 1); Belongs to the intercrine alpha (chemokine CxC) family. (97 aa)
	ccr9a	Chemokine (C-C motif) receptor 9a; Belongs to the G-protein coupled receptor 1 family. (369 aa)
	LOC795766	ADP-ribosylation factor 2b. (783 aa)
	cxcr4a	Chemokine (C-X-C motif) receptor 4a; Belongs to the G-protein coupled receptor 1 family. (360 aa)
	ccl27a	C-C motif chemokine. (93 aa)
	ccl25b	Chemokine (C-C motif) ligand 25b. (106 aa)
	il10	Interleukin-10. (180 aa)
	cd40lg	CD40 ligand; Belongs to the tumor necrosis factor family. (260 aa)
	mhc2dab	Novel protein similar to vertebrate major histocompatibility complex class II DAB gene (Mhc2dab). (250 aa)
	ccl27b	Chemokine (C-C motif) ligand 27b. (91 aa)
	tnfsf13	TNF superfamily member 13; Belongs to the tumor necrosis factor family. (199 aa)
	mhc2dcb	Si:busm1-228j01.4. (244 aa)
	il4	Interleukin-4. (127 aa)
	cd40	CD40 molecule, TNF receptor superfamily member 5. (286 aa)
	si:dkey-1h24.6	Si:dkey-1h24.6. (225 aa)
	tgfb1b	Transforming growth factor beta; Belongs to the TGF-beta family. (379 aa)
	ighv4-5	Immunoglobulin heavy variable 5-3. (121 aa)
	map3k14a	Mitogen-activated protein kinase kinase kinase 14a. (825 aa)
	il6	Interleukin 6 (interferon, beta 2). (231 aa)
	itga4	Integrin alpha 4; Belongs to the integrin alpha chain family. (1018 aa)
	ENSDARP00000133721	IG domain-containing protein. (280 aa)
	ENSDARP00000134462	Si:busm1-194e12.8. (236 aa)
	ccr9b	Chemokine (C-C motif) receptor 9b; Belongs to the G-protein coupled receptor 1 family. (380 aa)
	dZ48C11.3-001	Novel protein similar to MHC class II alpha chain. (236 aa)
	pigr	Polymeric immunoglobulin receptor. (335 aa)
	tnfsf13b	TNF superfamily member 13b; Belongs to the tumor necrosis factor family. (268 aa)
	mhc2b	Major histocompatibility complex class II integral membrane beta chain gene. (252 aa)
	ENSDARP00000151819	Ig-like domain-containing protein. (257 aa)
	zgc:103700	Zgc:103700. (250 aa)
	ccl25a	Chemokine (C-C motif) ligand 25a. (102 aa)

Your Current Organism:

Danio rerio

NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSDARP00000133721	si:dkey-1h24.6	ENSDARP00000133721	ENSDARP00000121388	IG domain-containing protein.	Si:dkey-1h24.6.	0.900
ENSDARP00000134462	ENSDARP00000151819	ENSDARP00000134462	ENSDARP00000151819	Si:busm1-194e12.8.	Ig-like domain-containing protein.	0.631
ENSDARP00000134462	M9MM93_DANRE	ENSDARP00000134462	ENSDARP00000010619	Si:busm1-194e12.8.	Si:ch73-211l2.3.	0.557
ENSDARP00000134462	dZ48C11.3-001	ENSDARP00000134462	ENSDARP00000136215	Si:busm1-194e12.8.	Novel protein similar to MHC class II alpha chain.	0.629
ENSDARP00000134462	mhc2a	ENSDARP00000134462	ENSDARP00000048447	Si:busm1-194e12.8.	Major histocompatibility complex class II integral membrane alpha chain gene.	0.642
ENSDARP00000134462	mhc2b	ENSDARP00000134462	ENSDARP00000148566	Si:busm1-194e12.8.	Major histocompatibility complex class II integral membrane beta chain gene.	0.778
ENSDARP00000134462	mhc2dab	ENSDARP00000134462	ENSDARP00000100252	Si:busm1-194e12.8.	Novel protein similar to vertebrate major histocompatibility complex class II DAB gene (Mhc2dab).	0.789
ENSDARP00000134462	mhc2dcb	ENSDARP00000134462	ENSDARP00000110668	Si:busm1-194e12.8.	Si:busm1-228j01.4.	0.799
ENSDARP00000134462	zgc:103700	ENSDARP00000134462	ENSDARP00000154033	Si:busm1-194e12.8.	Zgc:103700.	0.799
ENSDARP00000151819	ENSDARP00000134462	ENSDARP00000151819	ENSDARP00000134462	Ig-like domain-containing protein.	Si:busm1-194e12.8.	0.631
ENSDARP00000151819	M9MM93_DANRE	ENSDARP00000151819	ENSDARP00000010619	Ig-like domain-containing protein.	Si:ch73-211l2.3.	0.638
ENSDARP00000151819	dZ48C11.3-001	ENSDARP00000151819	ENSDARP00000136215	Ig-like domain-containing protein.	Novel protein similar to MHC class II alpha chain.	0.547
ENSDARP00000151819	mhc2a	ENSDARP00000151819	ENSDARP00000048447	Ig-like domain-containing protein.	Major histocompatibility complex class II integral membrane alpha chain gene.	0.553
ENSDARP00000151819	mhc2b	ENSDARP00000151819	ENSDARP00000148566	Ig-like domain-containing protein.	Major histocompatibility complex class II integral membrane beta chain gene.	0.705
ENSDARP00000151819	mhc2dab	ENSDARP00000151819	ENSDARP00000100252	Ig-like domain-containing protein.	Novel protein similar to vertebrate major histocompatibility complex class II DAB gene (Mhc2dab).	0.675
ENSDARP00000151819	mhc2dcb	ENSDARP00000151819	ENSDARP00000110668	Ig-like domain-containing protein.	Si:busm1-228j01.4.	0.738
ENSDARP00000151819	zgc:103700	ENSDARP00000151819	ENSDARP00000154033	Ig-like domain-containing protein.	Zgc:103700.	0.724
LOC795766	map3k14a	ENSDARP00000073556	ENSDARP00000125811	ADP-ribosylation factor 2b.	Mitogen-activated protein kinase kinase kinase 14a.	0.908
M9MM93_DANRE	ENSDARP00000134462	ENSDARP00000010619	ENSDARP00000134462	Si:ch73-211l2.3.	Si:busm1-194e12.8.	0.557
M9MM93_DANRE	ENSDARP00000151819	ENSDARP00000010619	ENSDARP00000151819	Si:ch73-211l2.3.	Ig-like domain-containing protein.	0.638

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