STRINGSTRING
rpl15e rpl15e rps19e rps19e rpl3p rpl3p rpl4lp rpl4lp rpl23 rpl23 rpl2p rpl2p rps19p rps19p rpl22p rpl22p rps3p rps3p rpl29 rpl29 rps17p rps17p rpl14p rpl14p rpl24p rpl24p rps4e rps4e rpl5p rpl5p rps14P rps14P rps8p rps8p rpl6p rpl6p rpl32e rpl32e rpl19e rpl19e rpl18p rpl18p rps5p rps5p rpl30p rpl30p rpl15p rpl15p rpl37e rpl37e rpl40e rpl40e rps8e rps8e rpl21e rpl21e top6B top6B rps13p rps13p rps4p rps4p rps11p rps11p rpl18e rpl18e rpl13p rpl13p rps9p rps9p rps2P rps2P rpl7ae rpl7ae rps28e rps28e rpl24e rpl24e nusG nusG rps17E rps17E rpl12p rpl12p rplP0 rplP0 rpl1P rpl1P rpl11p rpl11p rps15p rps15p rps3ae rps3ae rpl37ae rpl37ae rps27e rps27e rpl44e rpl44e rps10 rps10 rps7 rps7 rps12P rps12P rpl10e rpl10e rplX rplX rpl31e rpl31e rpl39e rpl39e rps6e rps6e rps10p rps10p rps24e rps24e rps27ae rps27ae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rpl15eRibosomal protein L15E; PFAM: Ribosomal L15; Belongs to the eukaryotic ribosomal protein eL15 family. (196 aa)
rps19eRibosomal protein S19E (S16A); May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family. (151 aa)
rpl3pArchaeal ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. (339 aa)
rpl4lp50S ribosomal protein L4P; Forms part of the polypeptide exit tunnel. (250 aa)
rpl23Archaeal ribosomal protein L23; Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Belongs to the universal ribosomal protein uL23 family. (84 aa)
rpl2pRibosomal protein L2, bacterial/organellar; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (240 aa)
rps19pRibosomal protein S19/S15; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (140 aa)
rpl22pRibosomal protein L22/L17; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. (159 aa)
rps3pRibosomal protein S3, eukaryotic/archaeal type; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family. (316 aa)
rpl29PFAM: Ribosomal L29 protein; TIGRFAM: ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. (76 aa)
rps17pArchaeal ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (144 aa)
rpl14p50S ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (132 aa)
rpl24pRibosomal protein L24p/L26e, archaeal/eukaryotic; Located at the polypeptide exit tunnel on the outside of the subunit. (118 aa)
rps4ePFAM: Ribosomal family S4e; RS4NT (NUC023) domain; Belongs to the eukaryotic ribosomal protein eS4 family. (232 aa)
rpl5pRibosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. May contact the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. (177 aa)
rps14PRibosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles. (62 aa)
rps8pRibosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (130 aa)
rpl6pArchaeal ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. (177 aa)
rpl32ePFAM: Ribosomal protein L32; Belongs to the eukaryotic ribosomal protein eL32 family. (236 aa)
rpl19eRibosomal protein L19E; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family. (149 aa)
rpl18pRibosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. (182 aa)
rps5pRibosomal protein S5/S2; With S4 and S12 plays an important role in translational accuracy. (218 aa)
rpl30pPFAM: Ribosomal protein L30p/L7e; TIGRFAM: 50S ribosomal protein L30P, archaeal. (155 aa)
rpl15pRibosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (159 aa)
rpl37eRibosomal protein L37E; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL37 family. (58 aa)
rpl40ePFAM: Ribosomal L40e family; Belongs to the eukaryotic ribosomal protein eL40 family. (49 aa)
rps8ePFAM: Ribosomal protein S8e; TIGRFAM: ribosomal protein S8.e. (123 aa)
rpl21ePFAM: Ribosomal protein L21e; Belongs to the eukaryotic ribosomal protein eL21 family. (102 aa)
top6BDNA topoisomerase VI, B subunit; Relaxes both positive and negative superturns and exhibits a strong decatenase activity. (826 aa)
rps13pArchaeal ribosomal protein S13P; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement; Belongs to the universal ribosomal protein uS13 family. (175 aa)
rps4pRibosomal protein S4/S9; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (173 aa)
rps11pArchaeal ribosomal protein S11P; Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family. (129 aa)
rpl18ePFAM: Ribosomal protein L18e/L15; Belongs to the eukaryotic ribosomal protein eL18 family. (117 aa)
rpl13pRibosomal protein L13, archaeal/eukaryotic; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (149 aa)
rps9pPFAM: Ribosomal protein S9/S16; TIGRFAM: archaeal ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family. (132 aa)
rps2PPFAM: Ribosomal protein S2; TIGRFAM: ribosomal protein Sa(cytosolic)/S2(archaeal); Belongs to the universal ribosomal protein uS2 family. (267 aa)
rpl7ae50S ribosomal protein L7Ae; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs. (120 aa)
rps28ePFAM: Ribosomal protein S28e; Belongs to the eukaryotic ribosomal protein eS28 family. (74 aa)
rpl24eRibosomal protein L24E; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL24 family. (116 aa)
nusGRibosomal protein L24p/L26e, archaeal; Stimulates transcription elongation; Belongs to the archaeal Spt5 family. (145 aa)
rps17ERibosomal protein S17E; PFAM: Ribosomal S17; Belongs to the eukaryotic ribosomal protein eS17 family. (63 aa)
rpl12p50S ribosomal protein L12P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the eukaryotic ribosomal protein P1/P2 family. (117 aa)
rplP0Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (349 aa)
rpl1PRibosomal protein L1; Binds directly to 23S rRNA. Probably involved in E site tRNA release. (210 aa)
rpl11pRibosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family. (162 aa)
rps15pRibosomal protein S15P/S13E; PFAM: Ribosomal S13/S15 N-terminal domain; Ribosomal protein S15. (157 aa)
rps3aePFAM: Ribosomal S3Ae family; Belongs to the eukaryotic ribosomal protein eS1 family. (206 aa)
rpl37aeRibosomal protein L37AE/L43A; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL43 family. (88 aa)
rps27ePFAM: Ribosomal protein S27. (57 aa)
rpl44eRibosomal protein L44E; Binds to the 23S rRNA. (93 aa)
rps10Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (111 aa)
rps7Ribosomal protein S7/S5; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center; Belongs to the universal ribosomal protein uS7 family. (202 aa)
rps12PRibosomal protein S23; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits. Belongs to the universal ribosomal protein uS12 family. (142 aa)
rpl10ePFAM: Ribosomal protein L16p/L10e; TIGRFAM: ribosomal protein L10.e; manually curated; Belongs to the universal ribosomal protein uL16 family. (176 aa)
rplXPFAM: Ribosomal L18ae/LX protein domain. (57 aa)
rpl31ePFAM: Ribosomal protein L31e; Belongs to the ribosomal protein L31e family. (92 aa)
rpl39ePFAM: Ribosomal L39 protein; Belongs to the eukaryotic ribosomal protein eL39 family. (50 aa)
rps6ePFAM: Ribosomal protein S6e; Belongs to the eukaryotic ribosomal protein eS6 family. (131 aa)
rps10pRibosomal protein S10/S20; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (102 aa)
rps24ePFAM: Ribosomal protein S24e; Belongs to the eukaryotic ribosomal protein eS24 family. (106 aa)
rps27aePFAM: Ribosomal protein S27a; Belongs to the eukaryotic ribosomal protein eS31 family. (44 aa)
Your Current Organism:
Natrinema pellirubrum
NCBI taxonomy Id: 797303
Other names: N. pellirubrum DSM 15624, Natrinema pellirubrum DSM 15624, Natrinema pellirubrum JCM 10476, Natrinema pellirubrum NCIMB 786, Natrinema pellirubrum str. DSM 15624, Natrinema pellirubrum strain DSM 15624
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.