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| | rps19e | Ribosomal protein S19E (S16A); May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family. (151 aa) |
| | AGB30446.1 | Aconitate hydratase, putative, Aquifex type; PFAM: Aconitase C-terminal domain; Aconitase family (aconitate hydratase); TIGRFAM: aconitate hydratase, putative, Aquifex type. (657 aa) |
| | AGB30449.1 | Putative exonuclease of the beta-lactamase fold involved in RNA processing; PFAM: Metallo-beta-lactamase superfamily; RNA-metabolising metallo-beta-lactamase; Beta-Casp domain. (412 aa) |
| | AGB30452.1 | 4-aminobutyrate aminotransferase family protein; PFAM: Aminotransferase class-III; TIGRFAM: 2,4-diaminobutyrate 4-transaminases; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (457 aa) |
| | rps6e | PFAM: Ribosomal protein S6e; Belongs to the eukaryotic ribosomal protein eS6 family. (131 aa) |
| | AGB30467.1 | PFAM: ATPase family associated with various cellular activities (AAA); Belongs to the AAA ATPase family. (468 aa) |
| | AGB30474.1 | PilT domain protein; PFAM: Fcf1. (130 aa) |
| | AGB30478.1 | PFAM: FAD binding domain of DNA photolyase; DNA photolyase. (463 aa) |
| | AGB30481.1 | 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase; PFAM: Fumarylacetoacetate (FAA) hydrolase family. (331 aa) |
| | phhB | PFAM: Pterin 4 alpha carbinolamine dehydratase. (93 aa) |
| | hemA | glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). (440 aa) |
| | dnaG | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Also part of the exosome, which is a complex involved in RNA degradation. Acts as a poly(A)-binding protein that enhances the interaction between heteropolymeric, adenine-rich transcripts and the exosome. (478 aa) |
| | AGB30547.1 | Putative signal-transduction protein containing cAMP-binding and CBS domains; PFAM: CBS domain. (134 aa) |
| | rps10p | Ribosomal protein S10/S20; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (102 aa) |
| | rps24e | PFAM: Ribosomal protein S24e; Belongs to the eukaryotic ribosomal protein eS24 family. (106 aa) |
| | rps27ae | PFAM: Ribosomal protein S27a; Belongs to the eukaryotic ribosomal protein eS31 family. (44 aa) |
| | AGB30644.1 | PUA-domain protein; PFAM: PUA domain; TIGRFAM: arCOG04150 universal archaeal PUA-domain protein; uncharacterized domain 2. (159 aa) |
| | AGB32670.1 | Orc1/cdc6 family replication initiation protein; Involved in regulation of DNA replication. (428 aa) |
| | AGB32656.1 | PFAM: NmrA-like family. (215 aa) |
| | topA | Topoisomerase IA; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA superco [...] (843 aa) |
| | thi4 | Thiazole biosynthesis enzyme; Involved in the biosynthesis of the thiazole moiety of thiamine. Catalyzes the conversion of NAD and glycine to adenosine diphosphate 5-(2-hydroxyethyl)-4-methylthiazole-2-carboxylate (ADT), an adenylated thiazole intermediate, using free sulfide as a source of sulfur. (309 aa) |
| | AGB32604.1 | Methylase involved in ubiquinone/menaquinone biosynthesis; PFAM: Methyltransferase domain. (233 aa) |
| | fen | Flap structure-specific endonuclease; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Binds the unpaired 3'-DNA end and kinks the DNA to facilitate 5' cleavage specificity. Cleaves one nucleotide into the double-stranded DNA from the junction in flap DNA, leaving a nick for ligation. Also involved in the base excision repair [...] (325 aa) |
| | nth | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (227 aa) |
| | mre11 | DNA repair exonuclease; Part of the Rad50/Mre11 complex, which is involved in the early steps of DNA double-strand break (DSB) repair. Mre11 binds to DSB ends and has both double-stranded 3'-5' exonuclease activity and single-stranded endonuclease activity; Belongs to the MRE11/RAD32 family. (457 aa) |
| | rps3ae | PFAM: Ribosomal S3Ae family; Belongs to the eukaryotic ribosomal protein eS1 family. (206 aa) |
| | rps15p | Ribosomal protein S15P/S13E; PFAM: Ribosomal S13/S15 N-terminal domain; Ribosomal protein S15. (157 aa) |
| | AGB32551.1 | Hypothetical protein; PFAM: CbiX. (299 aa) |
| | AGB32518.1 | PFAM: Magnesium chelatase, subunit ChlI; von Willebrand factor type A domain. (746 aa) |
| | tfe | Transcription initiation factor IIE, alpha subunit; Transcription factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Facilitates transcription initiation by enhancing TATA-box recognition by TATA-box-binding protein (Tbp), and transcription factor B (Tfb) and RNA polymerase recruitment. Not absolutely required for transcription in vitro, but particularly important in cases where Tbp or Tfb function is not optimal. It dynamically alters the nucleic acid-binding properties of RNA polymerases by stabilizing the initiation complex and destabilizing [...] (174 aa) |
| | AGB32410.1 | Putative signal-transduction protein containing cAMP-binding and CBS domains; PFAM: CBS domain. (202 aa) |
| | AGB32353.1 | acetyl/propionyl-CoA carboxylase, alpha subunit; PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain; Biotin carboxylase C-terminal domain; Carbamoyl-phosphate synthase L chain, N-terminal domain; Biotin-requiring enzyme; TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase subunit. (613 aa) |
| | AGB32331.1 | rRNA metabolism protein, SBDS family; PFAM: Shwachman-Bodian-Diamond syndrome (SBDS) protein; SBDS protein C-terminal domain; TIGRFAM: rRNA metabolism protein, SBDS family. (241 aa) |
| | AGB32328.1 | Methylase involved in ubiquinone/menaquinone biosynthesis. (212 aa) |
| | AGB32306.1 | Aconitate hydratase 1; PFAM: Aconitase C-terminal domain; Aconitase family (aconitate hydratase); TIGRFAM: aconitate hydratase 1. (920 aa) |
| | AGB32302.1 | PFAM: Thioredoxin. (124 aa) |
| | AGB32289.1 | RecA-superfamily ATPase possibly involved in signal transduction. (208 aa) |
| | hemA-2 | glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). (433 aa) |
| | AGB32244.1 | Putative phosphatase, C-terminal domain of histone macro H2A1 like protein; PFAM: Macro domain. (171 aa) |
| | rpl11p | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family. (162 aa) |
| | rpl1P | Ribosomal protein L1; Binds directly to 23S rRNA. Probably involved in E site tRNA release. (210 aa) |
| | rplP0 | Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (349 aa) |
| | rpl12p | 50S ribosomal protein L12P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the eukaryotic ribosomal protein P1/P2 family. (117 aa) |
| | AGB32213.1 | Peroxiredoxin; PFAM: AhpC/TSA family. (187 aa) |
| | AGB32175.1 | PFAM: Protein of unknown function (DUF833). (289 aa) |
| | AGB32154.1 | Putative RNA methylase; PFAM: Ribosomal protein L11 methyltransferase (PrmA). (218 aa) |
| | AGB32127.1 | Stress-induced morphogen; PFAM: BolA-like protein. (85 aa) |
| | AGB32126.1 | Thioredoxin-like protein; PFAM: NifU-like domain. (107 aa) |
| | AGB32119.1 | RNA-binding protein involved in rRNA processing. (79 aa) |
| | AGB32107.1 | Orc1/cdc6 family replication initiation protein; Involved in regulation of DNA replication. (408 aa) |
| | cetZ | Cell division GTPase; Involved in cell shape control; Belongs to the CetZ family. (386 aa) |
| | AGB32101.1 | PFAM: FAD binding domain of DNA photolyase; DNA photolyase. (467 aa) |
| | AGB32088.1 | Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase; PFAM: Aminotransferase class-V. (403 aa) |
| | rps17E | Ribosomal protein S17E; PFAM: Ribosomal S17; Belongs to the eukaryotic ribosomal protein eS17 family. (63 aa) |
| | AGB32060.1 | TIGRFAM: TIM-barrel protein, putative. (253 aa) |
| | AGB32052.1 | Putative nucleoside kinase, CMP and AMP kinase; Broad-specificity nucleoside monophosphate (NMP) kinase that catalyzes the reversible transfer of the terminal phosphate group between nucleoside triphosphates and monophosphates. Belongs to the adenylate kinase family. AK6 subfamily. (190 aa) |
| | AGB32050.1 | TIGRFAM: TIGR00270 family protein. (180 aa) |
| | AGB32019.1 | DNA-methyltransferase Dcm; PFAM: C-5 cytosine-specific DNA methylase; TIGRFAM: DNA-methyltransferase (dcm); manually curated; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. (438 aa) |
| | AGB32018.1 | DNA-methyltransferase Dcm; PFAM: C-5 cytosine-specific DNA methylase; TIGRFAM: DNA-methyltransferase (dcm); Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. (751 aa) |
| | AGB31954.1 | DNA/RNA helicase, superfamily II; PFAM: Helicase conserved C-terminal domain; Type III restriction enzyme, res subunit. (488 aa) |
| | dnaK | Chaperone protein DnaK; Acts as a chaperone. (644 aa) |
| | AGB31929.1 | Hypothetical protein; PFAM: Domain of unknown function (DUF74); Belongs to the UPF0145 family. (109 aa) |
| | AGB31910.1 | A/G-specific DNA glycosylase; PFAM: HhH-GPD superfamily base excision DNA repair protein; Helix-hairpin-helix motif; TIGRFAM: A/G-specific adenine glycosylase. (307 aa) |
| | AGB31893.1 | PFAM: Transcription factor S-II (TFIIS); TIGRFAM: transcription factor S, archaeal; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (109 aa) |
| | AGB31889.1 | Putative transcription factor, MBF1 like protein. (173 aa) |
| | nusG | Ribosomal protein L24p/L26e, archaeal; Stimulates transcription elongation; Belongs to the archaeal Spt5 family. (145 aa) |
| | AGB31877.1 | DNA-directed RNA polymerase, subunit M/transcription elongation factor TFIIS; PFAM: RNA polymerases M/15 Kd subunit. (105 aa) |
| | AGB31875.1 | DNA polymerase IV (family X); PFAM: PHP domain. (583 aa) |
| | AGB31838.1 | Hypothetical protein. (298 aa) |
| | AGB31802.1 | Orc1/cdc6 family replication initiation protein; Involved in regulation of DNA replication. (427 aa) |
| | AGB31778.1 | Putative nucleoside-diphosphate sugar epimerase; PFAM: NmrA-like family. (290 aa) |
| | AGB31732.1 | Orc1/cdc6 family replication initiation protein; Involved in regulation of DNA replication. (405 aa) |
| | tbp-2 | TATA-box binding protein (TBP), component of TFIID and TFIIIB; General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation. (186 aa) |
| | AGB31720.1 | PFAM: Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (448 aa) |
| | AGB31714.1 | PFAM: Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (443 aa) |
| | AGB31646.1 | 4-aminobutyrate aminotransferase family protein; PFAM: Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (439 aa) |
| | AGB31644.1 | 4-aminobutyrate aminotransferase family protein; PFAM: Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (436 aa) |
| | rpl24e | Ribosomal protein L24E; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL24 family. (116 aa) |
| | rps28e | PFAM: Ribosomal protein S28e; Belongs to the eukaryotic ribosomal protein eS28 family. (74 aa) |
| | rpl7ae | 50S ribosomal protein L7Ae; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs. (120 aa) |
| | rps2P | PFAM: Ribosomal protein S2; TIGRFAM: ribosomal protein Sa(cytosolic)/S2(archaeal); Belongs to the universal ribosomal protein uS2 family. (267 aa) |
| | rps9p | PFAM: Ribosomal protein S9/S16; TIGRFAM: archaeal ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family. (132 aa) |
| | rpl13p | Ribosomal protein L13, archaeal/eukaryotic; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (149 aa) |
| | rpl18e | PFAM: Ribosomal protein L18e/L15; Belongs to the eukaryotic ribosomal protein eL18 family. (117 aa) |
| | rps11p | Archaeal ribosomal protein S11P; Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family. (129 aa) |
| | rps4p | Ribosomal protein S4/S9; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (173 aa) |
| | rps13p | Archaeal ribosomal protein S13P; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement; Belongs to the universal ribosomal protein uS13 family. (175 aa) |
| | priS | DNA primase, eukaryotic-type, small subunit, putative; Catalytic subunit of DNA primase, an RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. The small subunit contains the primase catalytic core and has DNA synthesis activity on its own. Binding to the large subunit stabilizes and modulates the activity, increasing the rate of DNA synthesis while decreasing the length of the DNA fragments, and conferring RNA synthesis capability. The DNA polymerase activity may enable DNA primase to also catalyze primer extens [...] (391 aa) |
| | AGB31552.1 | AAA family ATPase, CDC48 subfamily; PFAM: Cell division protein 48 (CDC48), N-terminal domain; ATPase family associated with various cellular activities (AAA); Cell division protein 48 (CDC48), domain 2; TIGRFAM: AAA family ATPase, CDC48 subfamily. (754 aa) |
| | AGB31529.1 | Putative endoIII-related endonuclease; PFAM: HhH-GPD superfamily base excision DNA repair protein. (272 aa) |
| | AGB31518.1 | PFAM: Gas vesicle synthesis protein GvpO. (177 aa) |
| | AGB31517.1 | Gas vesicle protein GvpN; PFAM: AAA domain (dynein-related subfamily); TIGRFAM: gas vesicle protein GvpN. (341 aa) |
| | gvpA | Gas vesicle protein; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. GvpA type proteins form the essential core of the structure. (94 aa) |
| | AGB31515.1 | PFAM: Gas vesicle synthesis protein GvpL/GvpF. (207 aa) |
| | AGB31514.1 | PFAM: Gas vesicle protein G. (84 aa) |
| | AGB31512.1 | Hypothetical protein. (310 aa) |
| | AGB31511.1 | Gas vesicle protein; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. (198 aa) |
| | AGB31510.1 | PFAM: Gas vesicle protein K. (114 aa) |
| | AGB31509.1 | PFAM: Gas vesicle synthesis protein GvpL/GvpF. (314 aa) |
| | AGB31508.1 | Gas vesicle protein; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. (117 aa) |
| | rfcL | AAA ATPase; Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA; Belongs to the activator 1 small subunits family. RfcL subfamily. (498 aa) |
| | AGB31452.1 | 7-keto-8-aminopelargonate synthetase-like enzyme; PFAM: Aminotransferase class I and II; TIGRFAM: 8-amino-7-oxononanoate synthase. (407 aa) |
| | AGB31435.1 | Putative Fe-S protein; PFAM: MOSC N-terminal beta barrel domain; MOSC domain. (257 aa) |
| | AGB31423.1 | 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase; PFAM: Fumarylacetoacetate (FAA) hydrolase family. (245 aa) |
| | top6A | DNA topoisomerase VI, subunit A; Relaxes both positive and negative superturns and exhibits a strong decatenase activity; Belongs to the TOP6A family. (363 aa) |
| | top6B | DNA topoisomerase VI, B subunit; Relaxes both positive and negative superturns and exhibits a strong decatenase activity. (826 aa) |
| | gyrB | DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (643 aa) |
| | gyrA | DNA gyrase, A subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (829 aa) |
| | AGB31400.1 | Metal-dependent hydrolase, beta-lactamase superfamily III. (249 aa) |
| | AGB31371.1 | Methylase involved in ubiquinone/menaquinone biosynthesis; PFAM: Methyltransferase domain. (186 aa) |
| | AGB31364.1 | Putative signal-transduction protein containing cAMP-binding and CBS domains; PFAM: CBS domain. (138 aa) |
| | AGB31332.1 | HD superfamily phosphohydrolase; PFAM: HD domain. (410 aa) |
| | rpl21e | PFAM: Ribosomal protein L21e; Belongs to the eukaryotic ribosomal protein eL21 family. (102 aa) |
| | AGB31299.1 | PFAM: Anion-transporting ATPase; TIGRFAM: arsenite-activated ATPase ArsA. (404 aa) |
| | AGB31294.1 | PFAM: MutS domain V. (591 aa) |
| | AGB31287.1 | Ferredoxin; PFAM: 2Fe-2S iron-sulfur cluster binding domain. (124 aa) |
| | AGB31215.1 | Hypothetical protein; PFAM: Domain of unknown function (DUF362). (310 aa) |
| | AGB31164.1 | Orc1/cdc6 family replication initiation protein; Involved in regulation of DNA replication. (401 aa) |
| | AGB31144.1 | DNA-methyltransferase Dcm; PFAM: C-5 cytosine-specific DNA methylase; TIGRFAM: DNA-methyltransferase (dcm); Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. (647 aa) |
| | rps8e | PFAM: Ribosomal protein S8e; TIGRFAM: ribosomal protein S8.e. (123 aa) |
| | AGB31082.1 | AAA+ family ATPase; PFAM: Cell division protein 48 (CDC48), N-terminal domain; ATPase family associated with various cellular activities (AAA); Cell division protein 48 (CDC48), domain 2; TIGRFAM: AAA family ATPase, CDC48 subfamily. (744 aa) |
| | AGB31077.1 | AAA family ATPase, CDC48 subfamily; PFAM: ATPase family associated with various cellular activities (AAA); Cell division protein 48 (CDC48), N-terminal domain; Cell division protein 48 (CDC48), domain 2; TIGRFAM: AAA family ATPase, CDC48 subfamily. (743 aa) |
| | AGB31070.1 | CBS-domain-containing membrane protein; PFAM: CBS domain. (385 aa) |
| | AGB31050.1 | Electron transfer flavoprotein, beta subunit; PFAM: Electron transfer flavoprotein domain. (307 aa) |
| | AGB31049.1 | Electron transfer flavoprotein, alpha subunit; PFAM: Electron transfer flavoprotein domain; Electron transfer flavoprotein FAD-binding domain. (503 aa) |
| | AGB31048.1 | Flavin-dependent dehydrogenase; PFAM: FAD binding domain. (557 aa) |
| | AGB31032.1 | Single-stranded DNA-binding protein. (424 aa) |
| | AGB31022.1 | Helicase family protein with metal-binding cysteine cluster; PFAM: Helicase conserved C-terminal domain; Domain of unknown function (DUF1998); DEAD/DEAH box helicase. (835 aa) |
| | AGB31014.1 | PFAM: Aminotransferase class-III; TIGRFAM: 4-aminobutyrate aminotransferase, prokaryotic type; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (444 aa) |
| | AGB31010.1 | Putative HAD superfamily hydrolase; PFAM: haloacid dehalogenase-like hydrolase. (242 aa) |
| | AGB30998.1 | 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase; PFAM: Fumarylacetoacetate (FAA) hydrolase family. (252 aa) |
| | AGB30977.1 | Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase; PFAM: Aminotransferase class-V. (356 aa) |
| | AGB30968.1 | PFAM: Anion-transporting ATPase; TIGRFAM: arsenite-activated ATPase ArsA. (324 aa) |
| | trm1 | N2,N2-dimethylguanosine tRNA methyltransferase; Dimethylates a single guanine residue at position 26 of a number of tRNAs using S-adenosyl-L-methionine as donor of the methyl groups; Belongs to the class I-like SAM-binding methyltransferase superfamily. Trm1 family. (371 aa) |
| | AGB30952.1 | Orc1/cdc6 family replication initiation protein; Involved in regulation of DNA replication. (399 aa) |
| | rpl40e | PFAM: Ribosomal L40e family; Belongs to the eukaryotic ribosomal protein eL40 family. (49 aa) |
| | AGB30906.1 | Nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase family, central domain; UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; TIGRFAM: nucleotide sugar dehydrogenase. (429 aa) |
| | rpl37e | Ribosomal protein L37E; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL37 family. (58 aa) |
| | AGB30846.1 | DNA/RNA helicase, superfamily I; PFAM: DNA replication factor Dna2; UvrD/REP helicase. (925 aa) |
| | AGB30836.1 | PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. (243 aa) |
| | truB | rRNA pseudouridine synthase, putative; Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 2 subfamily. (301 aa) |
| | AGB30814.1 | Ferredoxin; PFAM: 2Fe-2S iron-sulfur cluster binding domain. (114 aa) |
| | rpl15p | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (159 aa) |
| | rpl30p | PFAM: Ribosomal protein L30p/L7e; TIGRFAM: 50S ribosomal protein L30P, archaeal. (155 aa) |
| | rps5p | Ribosomal protein S5/S2; With S4 and S12 plays an important role in translational accuracy. (218 aa) |
| | rpl18p | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. (182 aa) |
| | rpl19e | Ribosomal protein L19E; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family. (149 aa) |
| | rpl32e | PFAM: Ribosomal protein L32; Belongs to the eukaryotic ribosomal protein eL32 family. (236 aa) |
| | rpl6p | Archaeal ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. (177 aa) |
| | rps8p | Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (130 aa) |
| | rps14P | Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles. (62 aa) |
| | rpl5p | Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. May contact the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. (177 aa) |
| | rps4e | PFAM: Ribosomal family S4e; RS4NT (NUC023) domain; Belongs to the eukaryotic ribosomal protein eS4 family. (232 aa) |
| | rpl24p | Ribosomal protein L24p/L26e, archaeal/eukaryotic; Located at the polypeptide exit tunnel on the outside of the subunit. (118 aa) |
| | rpl14p | 50S ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (132 aa) |
| | rps17p | Archaeal ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (144 aa) |
| | rpl29 | PFAM: Ribosomal L29 protein; TIGRFAM: ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. (76 aa) |
| | rps3p | Ribosomal protein S3, eukaryotic/archaeal type; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family. (316 aa) |
| | rpl22p | Ribosomal protein L22/L17; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. (159 aa) |
| | rps19p | Ribosomal protein S19/S15; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (140 aa) |
| | rpl2p | Ribosomal protein L2, bacterial/organellar; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (240 aa) |
| | rpl23 | Archaeal ribosomal protein L23; Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Belongs to the universal ribosomal protein uL23 family. (84 aa) |
| | rpl4lp | 50S ribosomal protein L4P; Forms part of the polypeptide exit tunnel. (250 aa) |
| | rpl3p | Archaeal ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. (339 aa) |
| | AGB30785.1 | Hypothetical protein; PFAM: Uncharacterized ACR, COG2106. (291 aa) |
| | AGB30782.1 | PFAM: Domain of unknown function DUF77; TIGRFAM: uncharacterized protein, MTH1187 family. (104 aa) |
| | AGB30764.1 | 2-haloalkanoic acid dehalogenase, type II; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase; 2-haloalkanoic acid dehalogenase, type II. (227 aa) |
| | AGB30761.1 | PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. (219 aa) |
| | AGB30739.1 | PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain. (429 aa) |
| | AGB30714.1 | Methylase involved in ubiquinone/menaquinone biosynthesis; PFAM: Methyltransferase domain. (267 aa) |
| | nfo | Apurinic endonuclease APN1; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin. (291 aa) |
| | rpl15e | Ribosomal protein L15E; PFAM: Ribosomal L15; Belongs to the eukaryotic ribosomal protein eL15 family. (196 aa) |
| | AGB30705.1 | PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E; HAD-superfamily hydrolase, subfamily IIIA. (236 aa) |
| | AGB30694.1 | 4-aminobutyrate aminotransferase family protein; PFAM: Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (453 aa) |
| | AGB30686.1 | 4-aminobutyrate aminotransferase family protein; PFAM: Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (460 aa) |
| | AGB30672.1 | PFAM: Reversibly glycosylated polypeptide. (393 aa) |
| | AGB30663.1 | Hypothetical protein; PFAM: Uncharacterised ACR, COG2135. (250 aa) |
| | AGB30645.1 | CBS domain-containing protein; PFAM: CBS domain. (149 aa) |
| | AGB33639.1 | PFAM: GTPase of unknown function; TIGRFAM: small GTP-binding protein domain; IMG reference gene:2509882500_SP. (212 aa) |
| | AGB33630.1 | DNA helicase, Rad3; PFAM: DEAD_2. (790 aa) |
| | hel308 | Superfamily II helicase; DNA-dependent ATPase and 3'-5' DNA helicase that may be involved in repair of stalled replication forks. (790 aa) |
| | AGB33589.1 | Methylase involved in ubiquinone/menaquinone biosynthesis; PFAM: Methyltransferase domain. (280 aa) |
| | AGB33583.1 | PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase. (813 aa) |
| | AGB33578.1 | Putative transcriptional regulator, contains C-terminal CBS domains; PFAM: CBS domain. (283 aa) |
| | AGB33562.1 | Thioredoxin-like protein; PFAM: NifU-like domain. (121 aa) |
| | AGB33553.1 | uroporphyrin-III C-methyltransferase; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: uroporphyrin-III C-methyltransferase. (265 aa) |
| | AGB33534.1 | DNA helicase, Rad3; PFAM: DEAD_2. (619 aa) |
| | AGB33526.1 | PFAM: Aminotransferase class-III; TIGRFAM: 2,4-diaminobutyrate 4-transaminases; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (457 aa) |
| | rpl39e | PFAM: Ribosomal L39 protein; Belongs to the eukaryotic ribosomal protein eL39 family. (50 aa) |
| | rpl31e | PFAM: Ribosomal protein L31e; Belongs to the ribosomal protein L31e family. (92 aa) |
| | rplX | PFAM: Ribosomal L18ae/LX protein domain. (57 aa) |
| | AGB33460.1 | DNA helicase, Rad3; PFAM: DEAD_2; manually curated. (739 aa) |
| | rpl10e | PFAM: Ribosomal protein L16p/L10e; TIGRFAM: ribosomal protein L10.e; manually curated; Belongs to the universal ribosomal protein uL16 family. (176 aa) |
| | rps12P | Ribosomal protein S23; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits. Belongs to the universal ribosomal protein uS12 family. (142 aa) |
| | rps7 | Ribosomal protein S7/S5; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center; Belongs to the universal ribosomal protein uS7 family. (202 aa) |
| | AGB33368.1 | AMP-forming long-chain acyl-CoA synthetase; PFAM: AMP-binding enzyme. (652 aa) |
| | AGB33345.1 | PFAM: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD. (172 aa) |
| | AGB33278.1 | PFAM: KaiC; TIGRFAM: KaiC domain protein, AF_0351 family. (385 aa) |
| | AGB33243.1 | PFAM: Isocitrate/isopropylmalate dehydrogenase; TIGRFAM: isocitrate dehydrogenase, NADP-dependent, prokaryotic type. (420 aa) |
| | AGB33238.1 | Hypothetical protein. (174 aa) |
| | AGB33236.1 | NADP-dependent hydroxymethylglutaryl-CoA reductase; PFAM: Hydroxymethylglutaryl-coenzyme A reductase; TIGRFAM: 3-hydroxy-3-methylglutaryl Coenzyme A reductase, hydroxymethylglutaryl-CoA reductase (NADP); Belongs to the HMG-CoA reductase family. (408 aa) |
| | AGB33217.1 | PFAM: AMMECR1; TIGRFAM: uncharacterized protein, PH0010 family. (199 aa) |
| | AGB33215.1 | Single-stranded DNA-binding protein; PFAM: OB-fold nucleic acid binding domain. (499 aa) |
| | AGB33214.1 | Histones H3 and H4; PFAM: Histone-like transcription factor (CBF/NF-Y) and archaeal histone. (143 aa) |
| | AGB33176.1 | Hypothetical protein. (309 aa) |
| | AGB33154.1 | Methylase involved in ubiquinone/menaquinone biosynthesis; PFAM: Methyltransferase domain. (235 aa) |
| | AGB33090.1 | PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. (223 aa) |
| | AGB33061.1 | PFAM: ATP-binding region; TIGRFAM: MJ0570-related uncharacterized domain; TIGR00289 family protein; arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. (241 aa) |
| | AGB33054.1 | Hypothetical protein; PFAM: Saccharopine dehydrogenase. (375 aa) |
| | AGB33036.1 | Ferredoxin; PFAM: 2Fe-2S iron-sulfur cluster binding domain. (110 aa) |
| | rps10 | Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (111 aa) |
| | AGB33022.1 | PFAM: RNA polymerases M/15 Kd subunit; Transcription factor S-II (TFIIS); TIGRFAM: transcription factor S, archaeal; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (102 aa) |
| | nac | alpha-NAC-related protein; Contacts the emerging nascent chain on the ribosome. Belongs to the NAC-alpha family. (126 aa) |
| | pus10 | TIGR01213 family protein; Responsible for synthesis of pseudouridine from uracil-54 and uracil-55 in the psi GC loop of transfer RNAs. (457 aa) |
| | cetZ-2 | Cell division GTPase; Involved in cell shape control; Belongs to the CetZ family. (392 aa) |
| | AGB32917.1 | Putative nucleoside-diphosphate sugar epimerase; PFAM: NAD dependent epimerase/dehydratase family. (306 aa) |
| | smc | Chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family. (1196 aa) |
| | gatB | glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily. (498 aa) |
| | AGB32858.1 | Proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; NADH-ubiquinone oxidoreductase chain 4, amino terminus; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M. (507 aa) |
| | rpl44e | Ribosomal protein L44E; Binds to the 23S rRNA. (93 aa) |
| | rps27e | PFAM: Ribosomal protein S27. (57 aa) |
| | nop10 | Putative Zn-ribbon RNA-binding protein; Involved in ribosome biogenesis; more specifically in 18S rRNA pseudouridylation and in cleavage of pre-rRNA. (59 aa) |
| | AGB32772.1 | PFAM: NmrA-like family. (246 aa) |
| | rpl37ae | Ribosomal protein L37AE/L43A; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL43 family. (88 aa) |
| | AGB32723.1 | Methylase involved in ubiquinone/menaquinone biosynthesis; PFAM: Methyltransferase domain. (240 aa) |
| | AGB32720.1 | acetyl/propionyl-CoA carboxylase, alpha subunit; PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain; Biotin carboxylase C-terminal domain; Carbamoyl-phosphate synthase L chain, N-terminal domain; Biotin-requiring enzyme; TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase subunit. (590 aa) |
| | AGB32697.1 | Alcohol dehydrogenase, class IV; PFAM: Iron-containing alcohol dehydrogenase. (408 aa) |
| | AGB32689.1 | PFAM: 6-pyruvoyl tetrahydropterin synthase. (159 aa) |
| | AGB29952.1 | Orc1/cdc6 family replication initiation protein; Involved in regulation of DNA replication. (586 aa) |
| | rfc | DNA polymerase III, gamma/tau subunit; Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA; Belongs to the activator 1 small subunits family. RfcS subfamily. (330 aa) |
| | AGB30009.1 | Ferredoxin; PFAM: 2Fe-2S iron-sulfur cluster binding domain; TIGRFAM: ferredoxin [2Fe-2S]. (129 aa) |
| | AGB30047.1 | Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase; PFAM: Aminotransferase class-V; TIGRFAM: phosphoserine aminotransferase, putative. (363 aa) |
| | rnz | Ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family. (314 aa) |
| | AGB30055.1 | DNA polymerase III, gamma/tau subunit; PFAM: ATPase family associated with various cellular activities (AAA); Replication factor C. (334 aa) |
| | tbp | TATA-box binding protein (TBP), component of TFIID and TFIIIB; General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation. (186 aa) |
| | priL | DNA primase, large subunit; Regulatory subunit of DNA primase, an RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Stabilizes and modulates the activity of the small subunit, increasing the rate of DNA synthesis, and conferring RNA synthesis capability. The DNA polymerase activity may enable DNA primase to also catalyze primer extension after primer synthesis. May also play a role in DNA repair. (363 aa) |
| | mutS2 | Mismatch repair ATPase (MutS family); Has ATPase and non-specific DNA-binding activities. Belongs to the DNA mismatch repair MutS family. Archaeal Muts2 subfamily. (719 aa) |
| | cdc6 | Orc1/cdc6 family replication initiation protein; Involved in regulation of DNA replication. (376 aa) |
| | AGB30112.1 | PFAM: Anion-transporting ATPase; TIGRFAM: arsenite-activated ATPase ArsA. (324 aa) |
| | AGB30116.1 | Ferredoxin; PFAM: 2Fe-2S iron-sulfur cluster binding domain. (109 aa) |
| | AGB30118.1 | Ferredoxin; PFAM: 2Fe-2S iron-sulfur cluster binding domain. (123 aa) |
| | AGB30122.1 | PFAM: KH domain; TIGRFAM: arCOG04150 universal archaeal KH domain protein. (185 aa) |
| | endA | tRNA intron endonuclease; Endonuclease that removes tRNA introns. Cleaves pre-tRNA at the 5' and 3' splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3' cyclic phosphate and 5'-OH termini. Recognizes a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp. (358 aa) |
| | AGB30156.1 | Superfamily II helicase; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; Sec63 Brl domain. (784 aa) |
| | AGB30160.1 | PFAM: Dehydrogenase E1 component; TIGRFAM: pyruvate dehydrogenase E1 component, alpha subunit. (369 aa) |
| | AGB30161.1 | Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit; PFAM: Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain. (329 aa) |
| | AGB30201.1 | Putative GTPase; PFAM: Nucleolar GTP-binding protein 1 (NOG1); TIGRFAM: small GTP-binding protein domain. (328 aa) |
| | AGB30255.1 | Putative ATPase, Rnase L inhibitor (RLI) like protein; PFAM: ABC transporter; Possible metal-binding domain in RNase L inhibitor, RLI. (604 aa) |
| | truA | Pseudouridylate synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs; Belongs to the tRNA pseudouridine synthase TruA family. (279 aa) |
| | AGB30310.1 | PFAM: V-type ATPase 116kDa subunit family; Belongs to the V-ATPase 116 kDa subunit family. (750 aa) |
| | AGB30321.1 | Electron transfer flavoprotein, alpha subunit; PFAM: Electron transfer flavoprotein domain; Electron transfer flavoprotein FAD-binding domain. (318 aa) |
| | AGB30322.1 | Electron transfer flavoprotein, beta subunit; PFAM: Electron transfer flavoprotein domain. (263 aa) |
| | AGB30406.1 | KaiC; PFAM: KaiC. (334 aa) |
