(57 nodes) His Kinase A (phosphoacceptor) domain, and Transcriptional regulatory protein, C terminal network (Bacillus horikoshii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_001636495_00051	Unannotated protein. (228 aa)
	GCA_001636495_00052	Unannotated protein. (346 aa)
	FZC76_20615	Unannotated protein. (860 aa)
	FZC76_20620	Unannotated protein. (227 aa)
	FZC76_20625	Unannotated protein. (335 aa)
	FZC76_20630	Unannotated protein. (228 aa)
	FZC76_19760	Unannotated protein. (140 aa)
	FZC76_19765	Unannotated protein. (569 aa)
	GCA_001636495_00338	Unannotated protein. (222 aa)
	GCA_001636495_00339	Unannotated protein. (456 aa)
	GCA_001636495_00340	Unannotated protein. (185 aa)
	GCA_001636495_00341	Unannotated protein. (198 aa)
	FZC75_15725	Unannotated protein. (124 aa)
	GCA_001636495_01177	Unannotated protein. (517 aa)
	GCA_001636495_01354	Unannotated protein. (669 aa)
	GCA_001636495_01649	Unannotated protein. (456 aa)
	GCA_001636495_01650	Unannotated protein. (228 aa)
	GCA_001636495_01651	Unannotated protein. (419 aa)
	FZC76_08880	Unannotated protein. (241 aa)
	FZC76_08875	Unannotated protein. (589 aa)
	B4U37_15475	Unannotated protein. (46 aa)
	FZC76_07405	Unannotated protein. (469 aa)
	FZC76_07100	Unannotated protein. (422 aa)
	FZC76_10580	Unannotated protein. (230 aa)
	GCA_001636495_02234	Unannotated protein. (747 aa)
	FZC76_10590	Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily. (168 aa)
	GCA_001636495_02320	Unannotated protein. (235 aa)
	GCA_001636495_02321	Unannotated protein. (337 aa)
	GCA_001636495_02322	Unannotated protein. (256 aa)
	GCA_001636495_02323	Unannotated protein. (662 aa)
	FZC76_00775	Unannotated protein. (119 aa)
	FZC76_02075	Unannotated protein. (212 aa)
	FZC76_03135	Unannotated protein. (420 aa)
	FZC76_03205	Unannotated protein. (621 aa)
	B4U37_06845	Unannotated protein; Belongs to the P(II) protein family. (113 aa)
	FZC76_17400	Unannotated protein. (457 aa)
	FZC76_17050	Unannotated protein. (550 aa)
	GCA_001636495_03799	Unannotated protein. (470 aa)
	GCA_001636495_03800	Unannotated protein. (230 aa)
	FZC76_18150	Unannotated protein. (420 aa)
	FZC76_12480	Unannotated protein. (376 aa)
	FZC76_12490	Unannotated protein. (380 aa)
	GCA_001636495_04053	Unannotated protein. (458 aa)
	FZC76_12890	Unannotated protein. (231 aa)
	FZC76_13065	Unannotated protein. (807 aa)
	FZC76_13070	Unannotated protein. (125 aa)
	FZC76_13085	Unannotated protein. (533 aa)
	FZC76_13425	Unannotated protein. (430 aa)
	GCA_001636495_04172	Unannotated protein. (464 aa)
	GCA_001636495_04177	Unannotated protein. (594 aa)
	GCA_001636495_04220	Unannotated protein. (464 aa)
	GCA_001636495_04221	Unannotated protein. (228 aa)
	GCA_001636495_04271	Unannotated protein. (121 aa)
	GCA_001636495_04272	Unannotated protein. (620 aa)
	GCA_001636495_04273	Unannotated protein. (255 aa)
	GCA_001636495_04274	Unannotated protein. (238 aa)
	GCA_001636495_04275	Unannotated protein. (459 aa)

Your Current Organism:

Bacillus horikoshii

NCBI taxonomy Id: 79883
Other names: ATCC 700161, B. horikoshii, CIP 105300, DSM 8719, LMG 17946, LMG:17946, strain PN-121

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B4U37_06845	FZC76_02075	GCA_001636495_03632	GCA_001636495_03129	Unannotated protein; Belongs to the P(II) protein family.	Unannotated protein.	0.505
B4U37_06845	FZC76_07405	GCA_001636495_03632	GCA_001636495_01956	Unannotated protein; Belongs to the P(II) protein family.	Unannotated protein.	0.773
B4U37_06845	FZC76_13065	GCA_001636495_03632	GCA_001636495_04080	Unannotated protein; Belongs to the P(II) protein family.	Unannotated protein.	0.401
B4U37_06845	FZC76_17400	GCA_001636495_03632	GCA_001636495_03633	Unannotated protein; Belongs to the P(II) protein family.	Unannotated protein.	0.999
B4U37_06845	GCA_001636495_01177	GCA_001636495_03632	GCA_001636495_01177	Unannotated protein; Belongs to the P(II) protein family.	Unannotated protein.	0.773
B4U37_06845	GCA_001636495_01651	GCA_001636495_03632	GCA_001636495_01651	Unannotated protein; Belongs to the P(II) protein family.	Unannotated protein.	0.724
B4U37_06845	GCA_001636495_04172	GCA_001636495_03632	GCA_001636495_04172	Unannotated protein; Belongs to the P(II) protein family.	Unannotated protein.	0.773
B4U37_06845	GCA_001636495_04177	GCA_001636495_03632	GCA_001636495_04177	Unannotated protein; Belongs to the P(II) protein family.	Unannotated protein.	0.757
B4U37_15475	FZC76_03135	GCA_001636495_01893	GCA_001636495_03349	Unannotated protein.	Unannotated protein.	0.636
B4U37_15475	FZC76_03205	GCA_001636495_01893	GCA_001636495_03364	Unannotated protein.	Unannotated protein.	0.430
B4U37_15475	FZC76_13425	GCA_001636495_01893	GCA_001636495_04162	Unannotated protein.	Unannotated protein.	0.636
B4U37_15475	FZC76_18150	GCA_001636495_01893	GCA_001636495_03883	Unannotated protein.	Unannotated protein.	0.636
FZC75_15725	FZC76_03135	GCA_001636495_00814	GCA_001636495_03349	Unannotated protein.	Unannotated protein.	0.745
FZC75_15725	FZC76_03205	GCA_001636495_00814	GCA_001636495_03364	Unannotated protein.	Unannotated protein.	0.922
FZC75_15725	FZC76_07100	GCA_001636495_00814	GCA_001636495_02019	Unannotated protein.	Unannotated protein.	0.809
FZC75_15725	FZC76_07405	GCA_001636495_00814	GCA_001636495_01956	Unannotated protein.	Unannotated protein.	0.752
FZC75_15725	FZC76_08875	GCA_001636495_00814	GCA_001636495_01679	Unannotated protein.	Unannotated protein.	0.697
FZC75_15725	FZC76_12480	GCA_001636495_00814	GCA_001636495_03971	Unannotated protein.	Unannotated protein.	0.615
FZC75_15725	FZC76_12490	GCA_001636495_00814	GCA_001636495_03973	Unannotated protein.	Unannotated protein.	0.490
FZC75_15725	FZC76_13065	GCA_001636495_00814	GCA_001636495_04080	Unannotated protein.	Unannotated protein.	0.661