(42 nodes) cheY-homologous receiver domain network (Bacillus horikoshii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_001636495_04274	Unannotated protein. (238 aa)
	FZC76_13290	Unannotated protein. (225 aa)
	GCA_001636495_04195	Unannotated protein. (232 aa)
	FZC76_13085	Unannotated protein. (533 aa)
	GCA_001636495_04011	Unannotated protein. (230 aa)
	FZC76_12500	Unannotated protein. (933 aa)
	FZC76_12490	Unannotated protein. (380 aa)
	FZC76_18415	Unannotated protein. (210 aa)
	GCA_001636495_03800	Unannotated protein. (230 aa)
	FZC76_17035	Unannotated protein. (214 aa)
	FZC76_03195	Unannotated protein. (212 aa)
	FZC76_02585	Unannotated protein. (299 aa)
	B4U37_10015	Unannotated protein. (120 aa)
	GCA_001636495_03001	Unannotated protein. (360 aa)
	FZC76_00775	Unannotated protein. (119 aa)
	FZC76_00360	Unannotated protein. (199 aa)
	FZC76_00310	Unannotated protein. (229 aa)
	FZC76_19050	Unannotated protein. (242 aa)
	FZC76_11500	Unannotated protein. (239 aa)
	GCA_001636495_02320	Unannotated protein. (235 aa)
	FZC76_10580	Unannotated protein. (230 aa)
	spo0A	Unannotated protein; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process. (262 aa)
	FZC76_08880	Unannotated protein. (241 aa)
	GCA_001636495_01650	Unannotated protein. (228 aa)
	GCA_001636495_01380	Unannotated protein. (236 aa)
	FZC76_16730	Unannotated protein. (210 aa)
	FZC76_16655	Unannotated protein. (245 aa)
	FZC76_06515	Unannotated protein. (238 aa)
	FZC76_06145	Unannotated protein. (251 aa)
	GCA_001636495_00961	Unannotated protein. (529 aa)
	FZC75_15725	Unannotated protein. (124 aa)
	B4U37_21455	Unannotated protein. (233 aa)
	FZC76_12890	Unannotated protein. (231 aa)
	GCA_001636495_04221	Unannotated protein. (228 aa)
	FZC76_13070	Unannotated protein. (125 aa)
	GCA_001636495_00393	Unannotated protein. (202 aa)
	FZC76_19845	Unannotated protein. (211 aa)
	GCA_001636495_00338	Unannotated protein. (222 aa)
	FZC76_20630	Unannotated protein. (228 aa)
	GCA_001636495_00122	Unannotated protein. (231 aa)
	GCA_001636495_00051	Unannotated protein. (228 aa)
	FZC76_12785	Unannotated protein. (227 aa)

Your Current Organism:

Bacillus horikoshii

NCBI taxonomy Id: 79883
Other names: ATCC 700161, B. horikoshii, CIP 105300, DSM 8719, LMG 17946, LMG:17946, strain PN-121

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B4U37_10015	FZC76_00775	GCA_001636495_03010	GCA_001636495_02915	Unannotated protein.	Unannotated protein.	0.916
B4U37_10015	FZC76_02585	GCA_001636495_03010	GCA_001636495_03230	Unannotated protein.	Unannotated protein.	0.847
B4U37_10015	FZC76_13070	GCA_001636495_03010	GCA_001636495_04081	Unannotated protein.	Unannotated protein.	0.416
B4U37_10015	FZC76_13085	GCA_001636495_03010	GCA_001636495_04084	Unannotated protein.	Unannotated protein.	0.703
B4U37_10015	FZC76_13290	GCA_001636495_03010	GCA_001636495_04139	Unannotated protein.	Unannotated protein.	0.595
B4U37_10015	FZC76_20630	GCA_001636495_03010	GCA_001636495_00232	Unannotated protein.	Unannotated protein.	0.491
B4U37_10015	GCA_001636495_03001	GCA_001636495_03010	GCA_001636495_03001	Unannotated protein.	Unannotated protein.	0.847
B4U37_21455	FZC76_02585	GCA_001636495_00625	GCA_001636495_03230	Unannotated protein.	Unannotated protein.	0.499
B4U37_21455	FZC76_13085	GCA_001636495_00625	GCA_001636495_04084	Unannotated protein.	Unannotated protein.	0.700
FZC75_15725	FZC76_12490	GCA_001636495_00814	GCA_001636495_03973	Unannotated protein.	Unannotated protein.	0.490
FZC75_15725	FZC76_13085	GCA_001636495_00814	GCA_001636495_04084	Unannotated protein.	Unannotated protein.	0.423
FZC75_15725	FZC76_20630	GCA_001636495_00814	GCA_001636495_00232	Unannotated protein.	Unannotated protein.	0.581
FZC75_15725	GCA_001636495_03001	GCA_001636495_00814	GCA_001636495_03001	Unannotated protein.	Unannotated protein.	0.416
FZC75_15725	GCA_001636495_04274	GCA_001636495_00814	GCA_001636495_04274	Unannotated protein.	Unannotated protein.	0.697
FZC75_15725	spo0A	GCA_001636495_00814	GCA_001636495_02208	Unannotated protein.	Unannotated protein; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process.	0.919
FZC76_00360	FZC76_02585	GCA_001636495_02836	GCA_001636495_03230	Unannotated protein.	Unannotated protein.	0.486
FZC76_00775	B4U37_10015	GCA_001636495_02915	GCA_001636495_03010	Unannotated protein.	Unannotated protein.	0.916
FZC76_00775	FZC76_02585	GCA_001636495_02915	GCA_001636495_03230	Unannotated protein.	Unannotated protein.	0.742
FZC76_00775	FZC76_12890	GCA_001636495_02915	GCA_001636495_04054	Unannotated protein.	Unannotated protein.	0.661
FZC76_00775	FZC76_13085	GCA_001636495_02915	GCA_001636495_04084	Unannotated protein.	Unannotated protein.	0.470