(26 nodes) Mixed, incl. Golgi transport complex, and GARP complex network (Astyanax mexicanus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Vps51	VPS51 subunit of GARP complex. (825 aa)
	Cog8	Component of oligomeric golgi complex 8. (653 aa)
	LOC103044656	RAB34, member RAS oncogene family b. (256 aa)
	W5KKM1_ASTMX	Uncharacterized protein. (638 aa)
	tmf1	TATA element modulatory factor 1. (1161 aa)
	Rab30	RAB30, member RAS oncogene family. (248 aa)
	Cog7	Component of oligomeric golgi complex 7. (752 aa)
	RIC1	RIC1 homolog, RAB6A GEF complex partner 1. (1410 aa)
	Arl13a	ADP-ribosylation factor-like 13A. (441 aa)
	rgp1	GP1 homolog, RAB6A GEF complex partner 1. (386 aa)
	vps53	VPS53 subunit of GARP complex. (866 aa)
	ENSAMXP00000030482	Uncharacterized protein. (600 aa)
	vps50	VPS50 EARP/GARPII complex subunit. (990 aa)
	eipr1	EARP complex and GARP complex interacting protein 1. (387 aa)
	Cog3	Component of oligomeric golgi complex 3. (864 aa)
	Rab41	RAB41, member RAS oncogene family. (196 aa)
	arfrp1	ADP-ribosylation factor related protein 1. (201 aa)
	sys1	Protein SYS1 homolog; Involved in protein trafficking. Belongs to the SYS1 family. (156 aa)
	Cog6	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function. (651 aa)
	cog1	Component of oligomeric golgi complex 1. (982 aa)
	smim7	Small integral membrane protein 7. (77 aa)
	cog2	Component of oligomeric golgi complex 2. (731 aa)
	COG5	Component of oligomeric golgi complex 5. (857 aa)
	ENSAMXP00000048995	Uncharacterized protein. (133 aa)
	ENSAMXP00000053361	VPS52 subunit of GARP complex. (523 aa)
	vps54	VPS54 subunit of GARP complex. (1007 aa)

Your Current Organism:

Astyanax mexicanus

NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Arl13a	Cog3	ENSAMXP00000022137	ENSAMXP00000037551	ADP-ribosylation factor-like 13A.	Component of oligomeric golgi complex 3.	0.587
Arl13a	Cog6	ENSAMXP00000022137	ENSAMXP00000043495	ADP-ribosylation factor-like 13A.	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	0.731
Arl13a	Cog8	ENSAMXP00000022137	ENSAMXP00000003714	ADP-ribosylation factor-like 13A.	Component of oligomeric golgi complex 8.	0.802
Arl13a	ENSAMXP00000030482	ENSAMXP00000022137	ENSAMXP00000030482	ADP-ribosylation factor-like 13A.	Uncharacterized protein.	0.512
Arl13a	ENSAMXP00000048995	ENSAMXP00000022137	ENSAMXP00000048995	ADP-ribosylation factor-like 13A.	Uncharacterized protein.	0.508
Arl13a	ENSAMXP00000053361	ENSAMXP00000022137	ENSAMXP00000053361	ADP-ribosylation factor-like 13A.	VPS52 subunit of GARP complex.	0.512
Arl13a	LOC103044656	ENSAMXP00000022137	ENSAMXP00000006166	ADP-ribosylation factor-like 13A.	RAB34, member RAS oncogene family b.	0.531
Arl13a	RIC1	ENSAMXP00000022137	ENSAMXP00000018705	ADP-ribosylation factor-like 13A.	RIC1 homolog, RAB6A GEF complex partner 1.	0.722
Arl13a	Rab41	ENSAMXP00000022137	ENSAMXP00000040999	ADP-ribosylation factor-like 13A.	RAB41, member RAS oncogene family.	0.531
Arl13a	Vps51	ENSAMXP00000022137	ENSAMXP00000001816	ADP-ribosylation factor-like 13A.	VPS51 subunit of GARP complex.	0.622
Arl13a	W5KKM1_ASTMX	ENSAMXP00000022137	ENSAMXP00000008133	ADP-ribosylation factor-like 13A.	Uncharacterized protein.	0.512
Arl13a	cog1	ENSAMXP00000022137	ENSAMXP00000045121	ADP-ribosylation factor-like 13A.	Component of oligomeric golgi complex 1.	0.594
Arl13a	cog2	ENSAMXP00000022137	ENSAMXP00000048781	ADP-ribosylation factor-like 13A.	Component of oligomeric golgi complex 2.	0.571
Arl13a	rgp1	ENSAMXP00000022137	ENSAMXP00000028375	ADP-ribosylation factor-like 13A.	GP1 homolog, RAB6A GEF complex partner 1.	0.612
Arl13a	smim7	ENSAMXP00000022137	ENSAMXP00000046362	ADP-ribosylation factor-like 13A.	Small integral membrane protein 7.	0.508
Arl13a	sys1	ENSAMXP00000022137	ENSAMXP00000043464	ADP-ribosylation factor-like 13A.	Protein SYS1 homolog; Involved in protein trafficking. Belongs to the SYS1 family.	0.456
Arl13a	tmf1	ENSAMXP00000022137	ENSAMXP00000009425	ADP-ribosylation factor-like 13A.	TATA element modulatory factor 1.	0.601
Arl13a	vps53	ENSAMXP00000022137	ENSAMXP00000029420	ADP-ribosylation factor-like 13A.	VPS53 subunit of GARP complex.	0.695
Arl13a	vps54	ENSAMXP00000022137	ENSAMXP00000054207	ADP-ribosylation factor-like 13A.	VPS54 subunit of GARP complex.	0.633
COG5	Cog3	ENSAMXP00000048791	ENSAMXP00000037551	Component of oligomeric golgi complex 5.	Component of oligomeric golgi complex 3.	0.997