(20 nodes) Myosin II complex, and Myosin light chain kinase activity network (Astyanax mexicanus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103021650	Myosin, light chain 6, alkali, smooth muscle and non-muscle. (151 aa)
	LOC103034955	Myosin light chain kinase family, member 4b. (667 aa)
	acta2	Actin alpha 2, smooth muscle. (377 aa)
	W5KRM2_ASTMX	Myosin, heavy chain 10, non-muscle; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1897 aa)
	W5KRR2_ASTMX	Myosin, heavy chain 9a, non-muscle; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1690 aa)
	W5KV08_ASTMX	Myosin, light chain kinase a. (1127 aa)
	MYH6	Myosin heavy chain 6; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1942 aa)
	LOC103040564	Myosin light chain kinase b. (1014 aa)
	W5L7C8_ASTMX	Myosin, heavy chain 9b, non-muscle; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1829 aa)
	myl7	Myosin, light chain 7, regulatory. (171 aa)
	W5LTV5_ASTMX	Cardiac myosin light chain-1. (187 aa)
	LOC103022187	Myosin, light chain 9a, regulatory. (174 aa)
	ENSAMXP00000039253	Uncharacterized protein. (150 aa)
	LOC103039566	Uncharacterized protein. (172 aa)
	ENSAMXP00000041720	Uncharacterized protein. (156 aa)
	LOC103046635	Myosin light chain, phosphorylatable, fast skeletal muscle b. (170 aa)
	LOC103025732	Myosin, heavy chain 11a, smooth muscle; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1979 aa)
	LOC103022780	Uncharacterized protein. (217 aa)
	ENSAMXP00000045035	Uncharacterized protein. (190 aa)
	LOC103045271	Myosin, light chain 9b, regulatory. (173 aa)

Your Current Organism:

Astyanax mexicanus

NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAMXP00000039253	ENSAMXP00000041720	ENSAMXP00000039253	ENSAMXP00000041720	Uncharacterized protein.	Uncharacterized protein.	0.663
ENSAMXP00000039253	ENSAMXP00000045035	ENSAMXP00000039253	ENSAMXP00000045035	Uncharacterized protein.	Uncharacterized protein.	0.982
ENSAMXP00000039253	LOC103021650	ENSAMXP00000039253	ENSAMXP00000001726	Uncharacterized protein.	Myosin, light chain 6, alkali, smooth muscle and non-muscle.	0.900
ENSAMXP00000039253	LOC103022187	ENSAMXP00000039253	ENSAMXP00000029665	Uncharacterized protein.	Myosin, light chain 9a, regulatory.	0.982
ENSAMXP00000039253	LOC103022780	ENSAMXP00000039253	ENSAMXP00000044029	Uncharacterized protein.	Uncharacterized protein.	0.663
ENSAMXP00000039253	LOC103025732	ENSAMXP00000039253	ENSAMXP00000042198	Uncharacterized protein.	Myosin, heavy chain 11a, smooth muscle; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.974
ENSAMXP00000039253	LOC103034955	ENSAMXP00000039253	ENSAMXP00000006424	Uncharacterized protein.	Myosin light chain kinase family, member 4b.	0.746
ENSAMXP00000039253	LOC103039566	ENSAMXP00000039253	ENSAMXP00000041637	Uncharacterized protein.	Uncharacterized protein.	0.982
ENSAMXP00000039253	LOC103040564	ENSAMXP00000039253	ENSAMXP00000015557	Uncharacterized protein.	Myosin light chain kinase b.	0.729
ENSAMXP00000039253	LOC103045271	ENSAMXP00000039253	ENSAMXP00000046301	Uncharacterized protein.	Myosin, light chain 9b, regulatory.	0.982
ENSAMXP00000039253	LOC103046635	ENSAMXP00000039253	ENSAMXP00000041938	Uncharacterized protein.	Myosin light chain, phosphorylatable, fast skeletal muscle b.	0.692
ENSAMXP00000039253	MYH6	ENSAMXP00000039253	ENSAMXP00000013427	Uncharacterized protein.	Myosin heavy chain 6; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.566
ENSAMXP00000039253	W5KRM2_ASTMX	ENSAMXP00000039253	ENSAMXP00000010234	Uncharacterized protein.	Myosin, heavy chain 10, non-muscle; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.974
ENSAMXP00000039253	W5KRR2_ASTMX	ENSAMXP00000039253	ENSAMXP00000010274	Uncharacterized protein.	Myosin, heavy chain 9a, non-muscle; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.977
ENSAMXP00000039253	W5KV08_ASTMX	ENSAMXP00000039253	ENSAMXP00000011420	Uncharacterized protein.	Myosin, light chain kinase a.	0.729
ENSAMXP00000039253	W5L7C8_ASTMX	ENSAMXP00000039253	ENSAMXP00000015740	Uncharacterized protein.	Myosin, heavy chain 9b, non-muscle; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.977
ENSAMXP00000039253	acta2	ENSAMXP00000039253	ENSAMXP00000007944	Uncharacterized protein.	Actin alpha 2, smooth muscle.	0.948
ENSAMXP00000039253	myl7	ENSAMXP00000039253	ENSAMXP00000016015	Uncharacterized protein.	Myosin, light chain 7, regulatory.	0.823
ENSAMXP00000041720	ENSAMXP00000039253	ENSAMXP00000041720	ENSAMXP00000039253	Uncharacterized protein.	Uncharacterized protein.	0.663
ENSAMXP00000041720	LOC103021650	ENSAMXP00000041720	ENSAMXP00000001726	Uncharacterized protein.	Myosin, light chain 6, alkali, smooth muscle and non-muscle.	0.663