11 items (Astyanax mexicanus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103027845	SKI-like proto-oncogene b. (715 aa)
	LOC103046211	V-ski avian sarcoma viral oncogene homolog a. (790 aa)
	W5LD66_ASTMX	Mothers against decapentaplegic homolog. (573 aa)
	LOC103022359	Mothers against decapentaplegic homolog. (587 aa)
	LOC103029394	Mothers against decapentaplegic homolog. (544 aa)
	W5LJ85_ASTMX	Zinc finger, FYVE domain containing 9a. (1227 aa)
	LOC103027004	Mothers against decapentaplegic homolog. (424 aa)
	smad2	Mothers against decapentaplegic homolog. (468 aa)
	LOC103027811	Mothers against decapentaplegic homolog. (425 aa)
	skil	SKI-like proto-oncogene a. (681 aa)
	ENSAMXP00000053345	MH1 domain-containing protein. (187 aa)

Your Current Organism:

Astyanax mexicanus

NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAMXP00000053345	LOC103027004	ENSAMXP00000053345	ENSAMXP00000031297	MH1 domain-containing protein.	Mothers against decapentaplegic homolog.	0.790
ENSAMXP00000053345	LOC103027811	ENSAMXP00000053345	ENSAMXP00000046514	MH1 domain-containing protein.	Mothers against decapentaplegic homolog.	0.790
ENSAMXP00000053345	LOC103027845	ENSAMXP00000053345	ENSAMXP00000004340	MH1 domain-containing protein.	SKI-like proto-oncogene b.	0.772
ENSAMXP00000053345	LOC103046211	ENSAMXP00000053345	ENSAMXP00000014512	MH1 domain-containing protein.	V-ski avian sarcoma viral oncogene homolog a.	0.881
ENSAMXP00000053345	W5LJ85_ASTMX	ENSAMXP00000053345	ENSAMXP00000019897	MH1 domain-containing protein.	Zinc finger, FYVE domain containing 9a.	0.610
ENSAMXP00000053345	skil	ENSAMXP00000053345	ENSAMXP00000047448	MH1 domain-containing protein.	SKI-like proto-oncogene a.	0.772
ENSAMXP00000053345	smad2	ENSAMXP00000053345	ENSAMXP00000035422	MH1 domain-containing protein.	Mothers against decapentaplegic homolog.	0.791
LOC103022359	LOC103027004	ENSAMXP00000018891	ENSAMXP00000031297	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.977
LOC103022359	LOC103027811	ENSAMXP00000018891	ENSAMXP00000046514	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.977
LOC103022359	LOC103027845	ENSAMXP00000018891	ENSAMXP00000004340	Mothers against decapentaplegic homolog.	SKI-like proto-oncogene b.	0.772
LOC103022359	LOC103029394	ENSAMXP00000018891	ENSAMXP00000019787	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.901
LOC103022359	LOC103046211	ENSAMXP00000018891	ENSAMXP00000014512	Mothers against decapentaplegic homolog.	V-ski avian sarcoma viral oncogene homolog a.	0.881
LOC103022359	W5LD66_ASTMX	ENSAMXP00000018891	ENSAMXP00000017778	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.901
LOC103022359	W5LJ85_ASTMX	ENSAMXP00000018891	ENSAMXP00000019897	Mothers against decapentaplegic homolog.	Zinc finger, FYVE domain containing 9a.	0.610
LOC103022359	skil	ENSAMXP00000018891	ENSAMXP00000047448	Mothers against decapentaplegic homolog.	SKI-like proto-oncogene a.	0.772
LOC103022359	smad2	ENSAMXP00000018891	ENSAMXP00000035422	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.977
LOC103027004	ENSAMXP00000053345	ENSAMXP00000031297	ENSAMXP00000053345	Mothers against decapentaplegic homolog.	MH1 domain-containing protein.	0.790
LOC103027004	LOC103022359	ENSAMXP00000031297	ENSAMXP00000018891	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.977
LOC103027004	LOC103027811	ENSAMXP00000031297	ENSAMXP00000046514	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.900
LOC103027004	LOC103027845	ENSAMXP00000031297	ENSAMXP00000004340	Mothers against decapentaplegic homolog.	SKI-like proto-oncogene b.	0.800