(11 nodes) Mixed, incl. Chylomicron remodeling, and Reverse cholesterol transport network (Astyanax mexicanus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cetp	Cholesteryl ester transfer protein; Involved in the transfer of neutral lipids, including cholesteryl ester and triglyceride, among lipoprotein particles. Allows the net movement of cholesteryl ester from high density lipoproteins/HDL to triglyceride-rich very low density lipoproteins/VLDL, and the equimolar transport of triglyceride from VLDL to HDL; Belongs to the BPI/LBP/Plunc superfamily. BPI/LBP family. (501 aa)
	apof	Apolipoprotein F. (430 aa)
	ENSAMXP00000027926	Scavenger receptor class B, member 1; Belongs to the CD36 family. (480 aa)
	ENSAMXP00000030605	Vitellogenin domain-containing protein. (978 aa)
	apob	Apolipoprotein Ba. (4413 aa)
	ENSAMXP00000035084	Uncharacterized protein. (255 aa)
	ENSAMXP00000035399	Uncharacterized protein. (240 aa)
	Apoc1	Apolipoprotein C-I. (127 aa)
	ENSAMXP00000038500	Apolipoprotein Ea. (321 aa)
	LOC103031260	Apolipoprotein Bb, tandem duplicate 2. (3748 aa)
	LOC103043120	Apolipoprotein Eb. (281 aa)

Your Current Organism:

Astyanax mexicanus

NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Apoc1	ENSAMXP00000030605	ENSAMXP00000037768	ENSAMXP00000030605	Apolipoprotein C-I.	Vitellogenin domain-containing protein.	0.495
Apoc1	ENSAMXP00000035084	ENSAMXP00000037768	ENSAMXP00000035084	Apolipoprotein C-I.	Uncharacterized protein.	0.593
Apoc1	ENSAMXP00000035399	ENSAMXP00000037768	ENSAMXP00000035399	Apolipoprotein C-I.	Uncharacterized protein.	0.593
Apoc1	ENSAMXP00000038500	ENSAMXP00000037768	ENSAMXP00000038500	Apolipoprotein C-I.	Apolipoprotein Ea.	0.849
Apoc1	LOC103031260	ENSAMXP00000037768	ENSAMXP00000043440	Apolipoprotein C-I.	Apolipoprotein Bb, tandem duplicate 2.	0.495
Apoc1	LOC103043120	ENSAMXP00000037768	ENSAMXP00000044678	Apolipoprotein C-I.	Apolipoprotein Eb.	0.849
Apoc1	apob	ENSAMXP00000037768	ENSAMXP00000031207	Apolipoprotein C-I.	Apolipoprotein Ba.	0.495
ENSAMXP00000027926	ENSAMXP00000035084	ENSAMXP00000027926	ENSAMXP00000035084	Scavenger receptor class B, member 1; Belongs to the CD36 family.	Uncharacterized protein.	0.830
ENSAMXP00000027926	ENSAMXP00000035399	ENSAMXP00000027926	ENSAMXP00000035399	Scavenger receptor class B, member 1; Belongs to the CD36 family.	Uncharacterized protein.	0.830
ENSAMXP00000027926	ENSAMXP00000038500	ENSAMXP00000027926	ENSAMXP00000038500	Scavenger receptor class B, member 1; Belongs to the CD36 family.	Apolipoprotein Ea.	0.461
ENSAMXP00000027926	LOC103031260	ENSAMXP00000027926	ENSAMXP00000043440	Scavenger receptor class B, member 1; Belongs to the CD36 family.	Apolipoprotein Bb, tandem duplicate 2.	0.831
ENSAMXP00000027926	LOC103043120	ENSAMXP00000027926	ENSAMXP00000044678	Scavenger receptor class B, member 1; Belongs to the CD36 family.	Apolipoprotein Eb.	0.461
ENSAMXP00000027926	apob	ENSAMXP00000027926	ENSAMXP00000031207	Scavenger receptor class B, member 1; Belongs to the CD36 family.	Apolipoprotein Ba.	0.831
ENSAMXP00000027926	cetp	ENSAMXP00000027926	ENSAMXP00000003730	Scavenger receptor class B, member 1; Belongs to the CD36 family.	Cholesteryl ester transfer protein; Involved in the transfer of neutral lipids, including cholesteryl ester and triglyceride, among lipoprotein particles. Allows the net movement of cholesteryl ester from high density lipoproteins/HDL to triglyceride-rich very low density lipoproteins/VLDL, and the equimolar transport of triglyceride from VLDL to HDL; Belongs to the BPI/LBP/Plunc superfamily. BPI/LBP family.	0.491
ENSAMXP00000030605	Apoc1	ENSAMXP00000030605	ENSAMXP00000037768	Vitellogenin domain-containing protein.	Apolipoprotein C-I.	0.495
ENSAMXP00000030605	ENSAMXP00000035084	ENSAMXP00000030605	ENSAMXP00000035084	Vitellogenin domain-containing protein.	Uncharacterized protein.	0.754
ENSAMXP00000030605	ENSAMXP00000035399	ENSAMXP00000030605	ENSAMXP00000035399	Vitellogenin domain-containing protein.	Uncharacterized protein.	0.754
ENSAMXP00000030605	ENSAMXP00000038500	ENSAMXP00000030605	ENSAMXP00000038500	Vitellogenin domain-containing protein.	Apolipoprotein Ea.	0.615
ENSAMXP00000030605	LOC103043120	ENSAMXP00000030605	ENSAMXP00000044678	Vitellogenin domain-containing protein.	Apolipoprotein Eb.	0.615
ENSAMXP00000030605	apof	ENSAMXP00000030605	ENSAMXP00000026353	Vitellogenin domain-containing protein.	Apolipoprotein F.	0.534