(34 nodes) PRC1 complex, and FCS-type zinc finger superfamily network (Astyanax mexicanus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103026735	Si:ch211-230g15.5. (959 aa)
	W5KD25_ASTMX	Uncharacterized protein. (1355 aa)
	W5KDL6_ASTMX	L3MBTL histone methyl-lysine binding protein 1b. (759 aa)
	rnf2	Ring finger protein 2. (336 aa)
	phc3	Uncharacterized protein. (847 aa)
	cbx7	Chromobox homolog 7b. (189 aa)
	W5KMY1_ASTMX	Fibrosin. (1275 aa)
	LOC103025860	Polycomb group ring finger 5a. (239 aa)
	W5KSD6_ASTMX	Polyhomeotic homolog 1. (818 aa)
	LOC103040601	Uncharacterized protein. (1397 aa)
	W5LRE7_ASTMX	Polyhomeotic homolog 2a (Drosophila). (824 aa)
	cbx2	Chromobox homolog 2 (Drosophila Pc class). (550 aa)
	scml2	Scm polycomb group protein like 2. (723 aa)
	ENSAMXP00000028382	Neuronal pentraxin receptor a. (516 aa)
	LOC103044980	Chromobox homolog 8b. (374 aa)
	LOC103030095	Uncharacterized protein. (432 aa)
	LOC103040710	Activator of transcription and developmental regulator AUTS2 b. (769 aa)
	ENSAMXP00000035260	Chromo domain-containing protein. (442 aa)
	LOC103044866	RING1 and YY1 binding protein a. (392 aa)
	bmi1	Bmi1 polycomb ring finger oncogene 1a. (324 aa)
	ENSAMXP00000040351	Chromobox homolog 6b. (423 aa)
	LOC103021606	YY1 associated factor 2. (182 aa)
	ENSAMXP00000043762	Chromo domain-containing protein. (68 aa)
	cbx4	Chromobox 4. (522 aa)
	PCGF3	Polycomb group ring finger 3. (269 aa)
	ENSAMXP00000046031	SLED domain-containing protein. (145 aa)
	RING1	Ring finger protein 1. (377 aa)
	ENSAMXP00000046517	Uncharacterized protein. (1394 aa)
	LOC103034194	Bmi1 polycomb ring finger oncogene 1b. (332 aa)
	LOC103031044	Chromobox homolog 4 (Pc class homolog, Drosophila). (533 aa)
	ENSAMXP00000052818	Polycomb group ring finger 5b. (228 aa)
	ENSAMXP00000052847	Scm polycomb group protein homolog 1. (175 aa)
	ENSAMXP00000054778	Uncharacterized protein. (355 aa)
	LOC103036390	Polyhomeotic homolog 2b (Drosophila). (896 aa)

Your Current Organism:

Astyanax mexicanus

NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAMXP00000028382	ENSAMXP00000052818	ENSAMXP00000028382	ENSAMXP00000052818	Neuronal pentraxin receptor a.	Polycomb group ring finger 5b.	0.527
ENSAMXP00000028382	LOC103025860	ENSAMXP00000028382	ENSAMXP00000009299	Neuronal pentraxin receptor a.	Polycomb group ring finger 5a.	0.593
ENSAMXP00000028382	LOC103034194	ENSAMXP00000028382	ENSAMXP00000049822	Neuronal pentraxin receptor a.	Bmi1 polycomb ring finger oncogene 1b.	0.743
ENSAMXP00000028382	LOC103036390	ENSAMXP00000028382	ENSAMXP00000055022	Neuronal pentraxin receptor a.	Polyhomeotic homolog 2b (Drosophila).	0.566
ENSAMXP00000028382	LOC103044980	ENSAMXP00000028382	ENSAMXP00000028394	Neuronal pentraxin receptor a.	Chromobox homolog 8b.	0.575
ENSAMXP00000028382	PCGF3	ENSAMXP00000028382	ENSAMXP00000045840	Neuronal pentraxin receptor a.	Polycomb group ring finger 3.	0.508
ENSAMXP00000028382	RING1	ENSAMXP00000028382	ENSAMXP00000046288	Neuronal pentraxin receptor a.	Ring finger protein 1.	0.704
ENSAMXP00000028382	W5KSD6_ASTMX	ENSAMXP00000028382	ENSAMXP00000010498	Neuronal pentraxin receptor a.	Polyhomeotic homolog 1.	0.488
ENSAMXP00000028382	W5LRE7_ASTMX	ENSAMXP00000028382	ENSAMXP00000025490	Neuronal pentraxin receptor a.	Polyhomeotic homolog 2a (Drosophila).	0.526
ENSAMXP00000028382	bmi1	ENSAMXP00000028382	ENSAMXP00000036336	Neuronal pentraxin receptor a.	Bmi1 polycomb ring finger oncogene 1a.	0.597
ENSAMXP00000028382	phc3	ENSAMXP00000028382	ENSAMXP00000006487	Neuronal pentraxin receptor a.	Uncharacterized protein.	0.566
ENSAMXP00000028382	rnf2	ENSAMXP00000028382	ENSAMXP00000005730	Neuronal pentraxin receptor a.	Ring finger protein 2.	0.736
ENSAMXP00000035260	ENSAMXP00000040351	ENSAMXP00000035260	ENSAMXP00000040351	Chromo domain-containing protein.	Chromobox homolog 6b.	0.689
ENSAMXP00000035260	ENSAMXP00000043762	ENSAMXP00000035260	ENSAMXP00000043762	Chromo domain-containing protein.	Chromo domain-containing protein.	0.768
ENSAMXP00000035260	ENSAMXP00000046031	ENSAMXP00000035260	ENSAMXP00000046031	Chromo domain-containing protein.	SLED domain-containing protein.	0.574
ENSAMXP00000035260	ENSAMXP00000046517	ENSAMXP00000035260	ENSAMXP00000046517	Chromo domain-containing protein.	Uncharacterized protein.	0.530
ENSAMXP00000035260	ENSAMXP00000052818	ENSAMXP00000035260	ENSAMXP00000052818	Chromo domain-containing protein.	Polycomb group ring finger 5b.	0.581
ENSAMXP00000035260	ENSAMXP00000052847	ENSAMXP00000035260	ENSAMXP00000052847	Chromo domain-containing protein.	Scm polycomb group protein homolog 1.	0.574
ENSAMXP00000035260	ENSAMXP00000054778	ENSAMXP00000035260	ENSAMXP00000054778	Chromo domain-containing protein.	Uncharacterized protein.	0.530
ENSAMXP00000035260	LOC103021606	ENSAMXP00000035260	ENSAMXP00000041651	Chromo domain-containing protein.	YY1 associated factor 2.	0.428