STRINGSTRING
eftud2 eftud2 Cdc5l Cdc5l ppil2 ppil2 prpf6 prpf6 sf3b1 sf3b1 sf3b3 sf3b3 Sf1 Sf1 W5K8F2_ASTMX W5K8F2_ASTMX syf2 syf2 bud13 bud13 Dhx38 Dhx38 LOC103027102 LOC103027102 snrnp200 snrnp200 Hfm1 Hfm1 W5KH70_ASTMX W5KH70_ASTMX zmat5 zmat5 rbmx2 rbmx2 Rbm41 Rbm41 sart1 sart1 prpf3 prpf3 Snrpf Snrpf cwc15 cwc15 Ppil3 Ppil3 sf3b2 sf3b2 sf3b4 sf3b4 htatsf1 htatsf1 snw1 snw1 dqx1 dqx1 bud31 bud31 rnf113a rnf113a LOC103043042 LOC103043042 Bcas2 Bcas2 prpf31 prpf31 cdc40 cdc40 aqr aqr Cwc22 Cwc22 SRRM3 SRRM3 ccdc12 ccdc12 Sf3a3 Sf3a3 xab2 xab2 ddx23 ddx23 crnkl1 crnkl1 Ppie Ppie Tfip11 Tfip11 dhx34 dhx34 prpf8 prpf8 DHX35 DHX35 LOC103035322 LOC103035322 daw1 daw1 Snrnp35 Snrnp35 ddx46 ddx46 LOC103040872 LOC103040872 LOC103041383 LOC103041383 cwc27 cwc27 TCERG1L TCERG1L sf3a2 sf3a2 ENSAMXP00000030228 ENSAMXP00000030228 ENSAMXP00000030331 ENSAMXP00000030331 LOC103032399 LOC103032399 snrpg snrpg ENSAMXP00000031118 ENSAMXP00000031118 dhx16 dhx16 prpf18 prpf18 Ppil1 Ppil1 ZNF830 ZNF830 snrpd3 snrpd3 snrpb snrpb ddx42 ddx42 Srrm1 Srrm1 txnl4a txnl4a snrnp40 snrnp40 sf3a1 sf3a1 sf3b6 sf3b6 ENSAMXP00000039716 ENSAMXP00000039716 WDR25 WDR25 Lrmda Lrmda ENSAMXP00000041631 ENSAMXP00000041631 LOC103042719 LOC103042719 ENSAMXP00000041882 ENSAMXP00000041882 ENSAMXP00000043880 ENSAMXP00000043880 snrpd1 snrpd1 Snrpa1 Snrpa1 ENSAMXP00000044237 ENSAMXP00000044237 yju2 yju2 wdr53 wdr53 LOC103041055-2 LOC103041055-2 phf5a phf5a ppwd1 ppwd1 slu7 slu7 Rbm22 Rbm22 ENSAMXP00000047138 ENSAMXP00000047138 ENSAMXP00000047763 ENSAMXP00000047763 plrg1 plrg1 ENSAMXP00000048597 ENSAMXP00000048597 Wbp11 Wbp11 snrpb2 snrpb2 ENSAMXP00000051040 ENSAMXP00000051040 ENSAMXP00000051292 ENSAMXP00000051292 snrpd2 snrpd2 prpf19 prpf19 zcrb1 zcrb1 Ctnnbl1 Ctnnbl1 snrpa snrpa rnpc3 rnpc3 SNIP1 SNIP1 ENSAMXP00000054721 ENSAMXP00000054721
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
eftud2Elongation factor Tu GTP binding domain containing 2. (977 aa)
Cdc5lCDC5 cell division cycle 5-like (S. pombe). (766 aa)
ppil2Peptidylprolyl isomerase (cyclophilin)-like 2. (526 aa)
prpf6PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae). (974 aa)
sf3b1Splicing factor 3b, subunit 1. (1315 aa)
sf3b3Splicing factor 3b, subunit 3. (1217 aa)
Sf1Splicing factor 1. (746 aa)
W5K8F2_ASTMXCWF19 like cell cycle control factor 2. (780 aa)
syf2SYF2 pre-mRNA-splicing factor. (238 aa)
bud13BUD13 homolog. (519 aa)
Dhx38DEAH (Asp-Glu-Ala-His) box polypeptide 38. (1219 aa)
LOC103027102ISY1 splicing factor homolog. (285 aa)
snrnp200Small nuclear ribonucleoprotein 200 (U5). (2135 aa)
Hfm1Helicase for meiosis 1. (1444 aa)
W5KH70_ASTMXPRP4 pre-mRNA processing factor 4 homolog (yeast). (473 aa)
zmat5Zinc finger, matrin-type 5. (172 aa)
rbmx2RRM domain-containing protein. (386 aa)
Rbm41RNA binding motif protein 41. (457 aa)
sart1Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. (782 aa)
prpf3PRP3 pre-mRNA processing factor 3 homolog (yeast). (708 aa)
SnrpfSmall nuclear ribonucleoprotein polypeptide F. (85 aa)
cwc15CWC15 spliceosome associated protein homolog. (240 aa)
Ppil3Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (167 aa)
sf3b2Splicing factor 3b, subunit 2. (886 aa)
sf3b4Splicing factor 3b, subunit 4. (401 aa)
htatsf1HIV-1 Tat specific factor 1. (461 aa)
snw1SNW domain containing 1. (539 aa)
dqx1DEAQ box RNA-dependent ATPase 1. (777 aa)
bud31BUD31 homolog. (144 aa)
rnf113aRing finger protein 113A. (321 aa)
LOC103043042DEAH (Asp-Glu-Ala-His) box polypeptide 32b. (733 aa)
Bcas2BCAS2 pre-mRNA processing factor. (261 aa)
prpf31PRP31 pre-mRNA processing factor 31 homolog (yeast). (510 aa)
cdc40Cell division cycle 40 homolog (S. cerevisiae). (578 aa)
aqrAquarius intron-binding spliceosomal factor. (1471 aa)
Cwc22CWC22 spliceosome associated protein homolog. (821 aa)
SRRM3Serine/arginine repetitive matrix 3. (626 aa)
ccdc12Coiled-coil domain containing 12. (163 aa)
Sf3a3Splicing factor 3a, subunit 3. (579 aa)
xab2XPA binding protein 2. (849 aa)
ddx23DEAD (Asp-Glu-Ala-Asp) box polypeptide 23. (813 aa)
crnkl1Crooked neck pre-mRNA splicing factor 1. (742 aa)
PpiePeptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (298 aa)
Tfip11Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Belongs to the TFP11/STIP family. (853 aa)
dhx34DEAH (Asp-Glu-Ala-His) box polypeptide 34. (1151 aa)
prpf8Pre-mRNA processing factor 8. (2333 aa)
DHX35DEAH-box helicase 35. (654 aa)
LOC103035322Si:dkey-93h22.8. (1060 aa)
daw1Dynein assembly factor with WDR repeat domains 1. (415 aa)
Snrnp35Small nuclear ribonucleoprotein 35 (U11/U12). (209 aa)
ddx46DEAD (Asp-Glu-Ala-Asp) box polypeptide 46. (1051 aa)
LOC103040872Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
LOC103041383Uncharacterized protein. (206 aa)
cwc27CWC27 spliceosome associated cyclophilin. (477 aa)
TCERG1LTranscription elongation regulator 1 like. (596 aa)
sf3a2Splicing factor 3a, subunit 2. (302 aa)
ENSAMXP00000030228annotation not available (236 aa)
ENSAMXP00000030331Uncharacterized protein. (257 aa)
LOC103032399PPARG related coactivator 1. (1289 aa)
snrpgSmall nuclear ribonucleoprotein G. (77 aa)
ENSAMXP00000031118DEAH (Asp-Glu-Ala-His) box polypeptide 32a. (752 aa)
dhx16DEAH (Asp-Glu-Ala-His) box polypeptide 16. (1053 aa)
prpf18PRP18 pre-mRNA processing factor 18 homolog (yeast). (383 aa)
Ppil1Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (176 aa)
ZNF830Zinc finger protein 830. (379 aa)
snrpd3Small nuclear ribonucleoprotein Sm D3. (128 aa)
snrpbSmall nuclear ribonucleoprotein-associated protein. (238 aa)
ddx42DEAD (Asp-Glu-Ala-Asp) box helicase 42. (943 aa)
Srrm1PWI domain-containing protein. (230 aa)
txnl4aThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
snrnp40Small nuclear ribonucleoprotein 40 (U5). (378 aa)
sf3a1Splicing factor 3a, subunit 1. (786 aa)
sf3b6Splicing factor 3b, subunit 6. (125 aa)
ENSAMXP00000039716CWC25 spliceosome associated protein homolog. (388 aa)
WDR25WD repeat domain 25. (396 aa)
LrmdaUncharacterized protein. (54 aa)
ENSAMXP00000041631Uncharacterized protein. (488 aa)
LOC103042719Uncharacterized protein. (422 aa)
ENSAMXP00000041882annotation not available (166 aa)
ENSAMXP00000043880G patch domain and KOW motifs. (307 aa)
snrpd1Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (124 aa)
Snrpa1Small nuclear ribonucleoprotein polypeptide A. (232 aa)
ENSAMXP00000044237annotation not available (134 aa)
yju2YJU2 splicing factor homolog. (343 aa)
wdr53WD repeat domain 53. (394 aa)
LOC103041055-2Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
phf5aPHD finger protein 5A. (115 aa)
ppwd1Peptidylprolyl isomerase domain and WD repeat containing 1. (623 aa)
slu7SLU7 homolog, splicing factor. (565 aa)
Rbm22RNA binding motif protein 22. (482 aa)
ENSAMXP00000047138Leucine rich melanocyte differentiation associated. (247 aa)
ENSAMXP00000047763Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (161 aa)
plrg1Pleiotropic regulator 1. (514 aa)
ENSAMXP00000048597Uncharacterized protein. (109 aa)
Wbp11WW domain binding protein 11. (754 aa)
snrpb2Small nuclear ribonucleoprotein polypeptide B2. (219 aa)
ENSAMXP00000051040Small nuclear ribonucleoprotein polypeptide A. (95 aa)
ENSAMXP00000051292Leucine rich repeat containing 51. (183 aa)
snrpd2Small nuclear ribonucleoprotein Sm D2. (118 aa)
prpf19Pre-mRNA processing factor 19. (505 aa)
zcrb1Zinc finger CCHC-type and RNA binding motif 1. (220 aa)
Ctnnbl1Catenin, beta like 1. (579 aa)
snrpaSmall nuclear ribonucleoprotein polypeptide A. (281 aa)
rnpc3RNA-binding region (RNP1, RRM) containing 3. (508 aa)
SNIP1Smad nuclear interacting protein 1. (357 aa)
ENSAMXP00000054721Cwf21 domain-containing protein. (207 aa)
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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