STRINGSTRING
eftud2 eftud2 prpf6 prpf6 sf3b1 sf3b1 sf3b3 sf3b3 Sf1 Sf1 snrnp200 snrnp200 W5KH70_ASTMX W5KH70_ASTMX sart1 sart1 prpf3 prpf3 Snrpf Snrpf sf3b2 sf3b2 sf3b4 sf3b4 htatsf1 htatsf1 prpf31 prpf31 Sf3a3 Sf3a3 ddx23 ddx23 prpf8 prpf8 Snrnp35 Snrnp35 ddx46 ddx46 LOC103040872 LOC103040872 sf3a2 sf3a2 snrpg snrpg snrpd3 snrpd3 snrpb snrpb ddx42 ddx42 txnl4a txnl4a snrnp40 snrnp40 sf3a1 sf3a1 sf3b6 sf3b6 snrpd1 snrpd1 Snrpa1 Snrpa1 LOC103041055-2 LOC103041055-2 phf5a phf5a ENSAMXP00000047763 ENSAMXP00000047763 snrpb2 snrpb2 ENSAMXP00000051040 ENSAMXP00000051040 snrpd2 snrpd2 snrpa snrpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
eftud2Elongation factor Tu GTP binding domain containing 2. (977 aa)
prpf6PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae). (974 aa)
sf3b1Splicing factor 3b, subunit 1. (1315 aa)
sf3b3Splicing factor 3b, subunit 3. (1217 aa)
Sf1Splicing factor 1. (746 aa)
snrnp200Small nuclear ribonucleoprotein 200 (U5). (2135 aa)
W5KH70_ASTMXPRP4 pre-mRNA processing factor 4 homolog (yeast). (473 aa)
sart1Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. (782 aa)
prpf3PRP3 pre-mRNA processing factor 3 homolog (yeast). (708 aa)
SnrpfSmall nuclear ribonucleoprotein polypeptide F. (85 aa)
sf3b2Splicing factor 3b, subunit 2. (886 aa)
sf3b4Splicing factor 3b, subunit 4. (401 aa)
htatsf1HIV-1 Tat specific factor 1. (461 aa)
prpf31PRP31 pre-mRNA processing factor 31 homolog (yeast). (510 aa)
Sf3a3Splicing factor 3a, subunit 3. (579 aa)
ddx23DEAD (Asp-Glu-Ala-Asp) box polypeptide 23. (813 aa)
prpf8Pre-mRNA processing factor 8. (2333 aa)
Snrnp35Small nuclear ribonucleoprotein 35 (U11/U12). (209 aa)
ddx46DEAD (Asp-Glu-Ala-Asp) box polypeptide 46. (1051 aa)
LOC103040872Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
sf3a2Splicing factor 3a, subunit 2. (302 aa)
snrpgSmall nuclear ribonucleoprotein G. (77 aa)
snrpd3Small nuclear ribonucleoprotein Sm D3. (128 aa)
snrpbSmall nuclear ribonucleoprotein-associated protein. (238 aa)
ddx42DEAD (Asp-Glu-Ala-Asp) box helicase 42. (943 aa)
txnl4aThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
snrnp40Small nuclear ribonucleoprotein 40 (U5). (378 aa)
sf3a1Splicing factor 3a, subunit 1. (786 aa)
sf3b6Splicing factor 3b, subunit 6. (125 aa)
snrpd1Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (124 aa)
Snrpa1Small nuclear ribonucleoprotein polypeptide A. (232 aa)
LOC103041055-2Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
phf5aPHD finger protein 5A. (115 aa)
ENSAMXP00000047763Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (161 aa)
snrpb2Small nuclear ribonucleoprotein polypeptide B2. (219 aa)
ENSAMXP00000051040Small nuclear ribonucleoprotein polypeptide A. (95 aa)
snrpd2Small nuclear ribonucleoprotein Sm D2. (118 aa)
snrpaSmall nuclear ribonucleoprotein polypeptide A. (281 aa)
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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