21 items (Astyanax mexicanus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Rrs1	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (384 aa)
	ENSAMXP00000030493	Exonuclease domain-containing protein. (942 aa)
	wdr12	Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (422 aa)
	ftsj3	pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. (878 aa)
	gnl3	Guanine nucleotide binding protein-like 3 (nucleolar). (562 aa)
	exosc8	Exosome component 8. (277 aa)
	exosc10	Exosome component 10. (933 aa)
	W5L0F0_ASTMX	BOP1NT domain-containing protein. (195 aa)
	urb1	URB1 ribosome biogenesis homolog. (2216 aa)
	BOP1	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (633 aa)
	nol9	Nucleolar protein 9. (726 aa)
	rpp40	Ribonuclease P/MRP 40 subunit. (354 aa)
	PES1	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (546 aa)
	Exosc7	Exosome component 7. (292 aa)
	eri1	Exoribonuclease 1. (341 aa)
	exosc2	Exosome component 2. (295 aa)
	abt1	Activator of basal transcription 1. (301 aa)
	exosc3	Exosome component 3. (245 aa)
	kri1	KRI1 homolog. (793 aa)
	exosc9	Exosome component 9. (405 aa)
	nop9	Uncharacterized protein. (614 aa)

Your Current Organism:

Astyanax mexicanus

NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BOP1	PES1	ENSAMXP00000011870	ENSAMXP00000001242	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.995
BOP1	Rrs1	ENSAMXP00000011870	ENSAMXP00000033390	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	0.736
BOP1	W5L0F0_ASTMX	ENSAMXP00000011870	ENSAMXP00000013312	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	BOP1NT domain-containing protein.	0.778
BOP1	ftsj3	ENSAMXP00000011870	ENSAMXP00000022216	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	0.961
BOP1	gnl3	ENSAMXP00000011870	ENSAMXP00000021493	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Guanine nucleotide binding protein-like 3 (nucleolar).	0.966
BOP1	kri1	ENSAMXP00000011870	ENSAMXP00000047599	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	KRI1 homolog.	0.470
BOP1	nol9	ENSAMXP00000011870	ENSAMXP00000002739	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Nucleolar protein 9.	0.774
BOP1	nop9	ENSAMXP00000011870	ENSAMXP00000053692	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.756
BOP1	urb1	ENSAMXP00000011870	ENSAMXP00000012679	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	URB1 ribosome biogenesis homolog.	0.617
BOP1	wdr12	ENSAMXP00000011870	ENSAMXP00000028307	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.995
ENSAMXP00000030493	eri1	ENSAMXP00000030493	ENSAMXP00000041899	Exonuclease domain-containing protein.	Exoribonuclease 1.	0.561
ENSAMXP00000030493	nol9	ENSAMXP00000030493	ENSAMXP00000002739	Exonuclease domain-containing protein.	Nucleolar protein 9.	0.519
Exosc7	exosc10	ENSAMXP00000037513	ENSAMXP00000014930	Exosome component 7.	Exosome component 10.	0.997
Exosc7	exosc2	ENSAMXP00000037513	ENSAMXP00000042671	Exosome component 7.	Exosome component 2.	0.999
Exosc7	exosc3	ENSAMXP00000037513	ENSAMXP00000044447	Exosome component 7.	Exosome component 3.	0.999
Exosc7	exosc8	ENSAMXP00000037513	ENSAMXP00000016789	Exosome component 7.	Exosome component 8.	0.999
Exosc7	exosc9	ENSAMXP00000037513	ENSAMXP00000049540	Exosome component 7.	Exosome component 9.	0.999
Exosc7	wdr12	ENSAMXP00000037513	ENSAMXP00000028307	Exosome component 7.	Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.630
PES1	BOP1	ENSAMXP00000001242	ENSAMXP00000011870	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.995
PES1	Rrs1	ENSAMXP00000001242	ENSAMXP00000033390	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	0.965