29 items (Astyanax mexicanus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	XPO5	Exportin 5. (880 aa)
	ranbp3l	RAN binding protein 3 like. (459 aa)
	ankle1	Zgc:85936. (1247 aa)
	styx	Serine/threonine/tyrosine interacting protein. (224 aa)
	ENSAMXP00000028327	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 3. (365 aa)
	LOC111195493	Desumoylating isopeptidase 1a. (169 aa)
	hspa9	Heat shock protein 9; Belongs to the heat shock protein 70 family. (679 aa)
	xpo6	Exportin 6. (1128 aa)
	ENSAMXP00000037759	Nuclear transport factor 2. (139 aa)
	STRADB	STE20 related adaptor beta. (428 aa)
	ENSAMXP00000040270	Uncharacterized protein. (227 aa)
	LOC103024839	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2a. (470 aa)
	strada	STE20 related adaptor alpha. (428 aa)
	ENSAMXP00000050539	Uncharacterized protein. (552 aa)
	ENSAMXP00000050613	Uncharacterized protein. (85 aa)
	cse1l	CSE1 chromosome segregation 1-like (yeast). (971 aa)
	tgfb2	Transforming growth factor beta; Belongs to the TGF-beta family. (401 aa)
	tgfb1	Transforming growth factor beta; Belongs to the TGF-beta family. (386 aa)
	W5K6B4_ASTMX	Exportin 1 (CRM1 homolog, yeast) a. (943 aa)
	chp1	Calcineurin-like EF-hand protein 1. (194 aa)
	LOC103046730	Desumoylating isopeptidase 1b. (169 aa)
	xpo7	Exportin 7. (1096 aa)
	W5LJ26_ASTMX	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2b. (445 aa)
	LOC103021592	Exportin 1 (CRM1 homolog, yeast) b. (1071 aa)
	W5KZA4_ASTMX	Uncharacterized protein. (1052 aa)
	W5KUR6_ASTMX	Polycystic kidney disease 1a. (4355 aa)
	LOC103024607	Transforming growth factor beta; Belongs to the TGF-beta family. (377 aa)
	Cchcr1	Uncharacterized protein. (628 aa)
	Xpo4	Exportin 4. (1129 aa)

Your Current Organism:

Astyanax mexicanus

NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAMXP00000037759	W5KZA4_ASTMX	ENSAMXP00000037759	ENSAMXP00000012916	Nuclear transport factor 2.	Uncharacterized protein.	0.556
ENSAMXP00000037759	cse1l	ENSAMXP00000037759	ENSAMXP00000051770	Nuclear transport factor 2.	CSE1 chromosome segregation 1-like (yeast).	0.408
ENSAMXP00000040270	ENSAMXP00000050539	ENSAMXP00000040270	ENSAMXP00000050539	Uncharacterized protein.	Uncharacterized protein.	0.931
ENSAMXP00000040270	W5KZA4_ASTMX	ENSAMXP00000040270	ENSAMXP00000012916	Uncharacterized protein.	Uncharacterized protein.	0.839
ENSAMXP00000040270	XPO5	ENSAMXP00000040270	ENSAMXP00000005374	Uncharacterized protein.	Exportin 5.	0.734
ENSAMXP00000040270	cse1l	ENSAMXP00000040270	ENSAMXP00000051770	Uncharacterized protein.	CSE1 chromosome segregation 1-like (yeast).	0.565
ENSAMXP00000040270	xpo7	ENSAMXP00000040270	ENSAMXP00000021069	Uncharacterized protein.	Exportin 7.	0.408
ENSAMXP00000050539	ENSAMXP00000040270	ENSAMXP00000050539	ENSAMXP00000040270	Uncharacterized protein.	Uncharacterized protein.	0.931
ENSAMXP00000050539	W5KZA4_ASTMX	ENSAMXP00000050539	ENSAMXP00000012916	Uncharacterized protein.	Uncharacterized protein.	0.839
ENSAMXP00000050539	cse1l	ENSAMXP00000050539	ENSAMXP00000051770	Uncharacterized protein.	CSE1 chromosome segregation 1-like (yeast).	0.565
ENSAMXP00000050539	xpo7	ENSAMXP00000050539	ENSAMXP00000021069	Uncharacterized protein.	Exportin 7.	0.408
ENSAMXP00000050613	W5KZA4_ASTMX	ENSAMXP00000050613	ENSAMXP00000012916	Uncharacterized protein.	Uncharacterized protein.	0.962
ENSAMXP00000050613	cse1l	ENSAMXP00000050613	ENSAMXP00000051770	Uncharacterized protein.	CSE1 chromosome segregation 1-like (yeast).	0.729
ENSAMXP00000050613	xpo7	ENSAMXP00000050613	ENSAMXP00000021069	Uncharacterized protein.	Exportin 7.	0.502
LOC103021592	W5KZA4_ASTMX	ENSAMXP00000013105	ENSAMXP00000012916	Exportin 1 (CRM1 homolog, yeast) b.	Uncharacterized protein.	0.962
LOC103021592	cse1l	ENSAMXP00000013105	ENSAMXP00000051770	Exportin 1 (CRM1 homolog, yeast) b.	CSE1 chromosome segregation 1-like (yeast).	0.729
LOC103021592	xpo7	ENSAMXP00000013105	ENSAMXP00000021069	Exportin 1 (CRM1 homolog, yeast) b.	Exportin 7.	0.502
LOC103024607	tgfb1	ENSAMXP00000010023	ENSAMXP00000002667	Transforming growth factor beta; Belongs to the TGF-beta family.	Transforming growth factor beta; Belongs to the TGF-beta family.	0.902
STRADB	strada	ENSAMXP00000038993	ENSAMXP00000046957	STE20 related adaptor beta.	STE20 related adaptor alpha.	0.902
W5K6B4_ASTMX	W5KZA4_ASTMX	ENSAMXP00000003125	ENSAMXP00000012916	Exportin 1 (CRM1 homolog, yeast) a.	Uncharacterized protein.	0.962