83 items (Astyanax mexicanus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	W5LD66_ASTMX	Mothers against decapentaplegic homolog. (573 aa)
	hps1	HPS1 biogenesis of lysosomal organelles complex 3 subunit 1. (672 aa)
	park7	Parkinson protein 7. (189 aa)
	LOC103023344	Uncharacterized protein. (412 aa)
	LOC103035354	Transient receptor potential cation channel subfamily C member 2b; Belongs to the transient receptor (TC 1.A.4) family. (1014 aa)
	LOC103045765	Si:ch211-163l21.11. (373 aa)
	ubap2	Ubiquitin associated protein 2a. (1169 aa)
	W5KL30_ASTMX	Fetuin B. (494 aa)
	W5KNE7_ASTMX	Uncharacterized protein. (381 aa)
	LOC111196783	ZP domain-containing protein. (739 aa)
	LOC103022779	Ash1 (absent, small, or homeotic)-like (Drosophila). (2955 aa)
	W5KS46_ASTMX	Coiled-coil domain containing 136b. (379 aa)
	W5KU76_ASTMX	Uncharacterized protein. (2518 aa)
	LOC103022761	ZP domain-containing protein. (728 aa)
	ar	Androgen receptor. (839 aa)
	LOC103026309	Folate receptor. (250 aa)
	W5KXE0_ASTMX	Transient receptor potential cation channel subfamily C member 2a. (801 aa)
	ube3a	Ubiquitin-protein ligase E3A; E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and transfers it to its substrates. (873 aa)
	Arsa	Arylsulfatase A. (532 aa)
	LOC103027200	Bromo domain-containing protein. (1529 aa)
	W5L1C8_ASTMX	Uncharacterized protein. (350 aa)
	LOC103032734	Brambleberry. (616 aa)
	ybx1	Y box binding protein 1. (312 aa)
	TRPC7	Transient receptor potential cation channel subfamily C member 7; Belongs to the transient receptor (TC 1.A.4) family. (977 aa)
	LOC103036607	Bromo domain-containing protein. (1917 aa)
	W5LD04_ASTMX	Uncharacterized protein. (328 aa)
	LOC103032763	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (137 aa)
	tspan2	Tetraspanin. (212 aa)
	LOC103023058	ZP domain-containing protein. (397 aa)
	ENSAMXP00000044124	VWFD domain-containing protein. (133 aa)
	LOC111197585	ZP domain-containing protein. (416 aa)
	ENSAMXP00000044559	Uncharacterized protein. (1473 aa)
	ENSAMXP00000046379	TACC_C domain-containing protein. (4832 aa)
	ENSAMXP00000046829	Transient receptor potential cation channel, subfamily C, member 6b; Belongs to the transient receptor (TC 1.A.4) family. (823 aa)
	Adcy3	Adenylate cyclase type 3; Catalyzes the formation of the signaling molecule cAMP in response to G-protein signaling. (1141 aa)
	lhfpl2	LHFPL tetraspan subfamily member 2a. (225 aa)
	fam107b	Family with sequence similarity 107 member B. (310 aa)
	cct2	Chaperonin containing TCP1, subunit 2 (beta). (535 aa)
	Ptrhd1	Peptidyl-tRNA hydrolase domain containing 1. (144 aa)
	LOC103035660	Zgc:110224. (437 aa)
	ENSAMXP00000053345	MH1 domain-containing protein. (187 aa)
	ENSAMXP00000054018	annotation not available (128 aa)
	LOC103039585	LHFPL tetraspan subfamily member 2b. (221 aa)
	LOC103028636	Tetraspanin. (230 aa)
	ENSAMXP00000043290	Lymphoid-restricted membrane protein. (1210 aa)
	ENSAMXP00000042639	TIL domain-containing protein. (105 aa)
	LOC111197584	ZP domain-containing protein. (417 aa)
	ENSAMXP00000041204	ZP domain-containing protein. (423 aa)
	LOC103033944	ZP domain-containing protein. (451 aa)
	Rbm48	RNA binding motif protein 48. (458 aa)
	ENSAMXP00000038247	VWFD domain-containing protein. (171 aa)
	LOC111193015	ZP domain-containing protein. (451 aa)
	LOC103047295	Tetraspanin. (228 aa)
	ENSAMXP00000036671	ZP domain-containing protein. (429 aa)
	LOC103034117	Coiled-coil domain containing 136b. (384 aa)
	LOC103032246	Zona pellucida glycoprotein 2, like 2. (494 aa)
	glrb	Glycine receptor, beta b; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (505 aa)
	ENSAMXP00000033934	VWFD domain-containing protein. (455 aa)
	LOC103032320	Homeobox C10a. (348 aa)
	ENSAMXP00000033840	Hyaluronidase. (431 aa)
	LOC103034748	Adenylate cyclase type 3; Catalyzes the formation of the signaling molecule cAMP in response to G-protein signaling. (1092 aa)
	spaca6	Ig-like domain-containing protein. (336 aa)
	ENSAMXP00000032971	Zona pellucida protein AX 1. (877 aa)
	ENSAMXP00000032952	Si:ch211-284e20.8. (296 aa)
	ENSAMXP00000032857	ZP domain-containing protein. (214 aa)
	ENSAMXP00000032733	ZP domain-containing protein. (489 aa)
	trpc3	Transient receptor potential cation channel, subfamily C, member 3; Belongs to the transient receptor (TC 1.A.4) family. (918 aa)
	ubap2l	Ubiquitin associated protein 2-like. (1218 aa)
	LOC103035292	Transient receptor potential cation channel, subfamily C, member 7a; Belongs to the transient receptor (TC 1.A.4) family. (905 aa)
	slc22a16	Solute carrier family 22 member 16. (570 aa)
	Spa17	Sperm surface protein Sp17; Sperm surface zona pellucida binding protein. Helps to bind spermatozoa to the zona pellucida with high affinity. Might function in binding zona pellucida and carbohydrates. (189 aa)
	LOC103026672	Ubiquitin associated protein 2b. (1059 aa)
	LOC103042548	Sperm acrosome associated 4 like. (124 aa)
	ENSAMXP00000028486	Mothers against decapentaplegic homolog. (493 aa)
	ENSAMXP00000028100	Zonadhesin, like. (1663 aa)
	LOC103040872	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
	ENSAMXP00000027755	WAP domain-containing protein. (89 aa)
	LOC103041735	Glycine receptor, beta a; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (502 aa)
	cct5	Chaperonin containing TCP1, subunit 5 (epsilon). (541 aa)
	LOC103029394	Mothers against decapentaplegic homolog. (544 aa)
	cct3	T-complex protein 1 subunit gamma. (541 aa)
	LOC103022359	Mothers against decapentaplegic homolog. (587 aa)
	LOC103025180	Transient receptor potential cation channel, subfamily C, member 6a; Belongs to the transient receptor (TC 1.A.4) family. (888 aa)

Your Current Organism:

Astyanax mexicanus

NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAMXP00000032733	ENSAMXP00000032971	ENSAMXP00000032733	ENSAMXP00000032971	ZP domain-containing protein.	Zona pellucida protein AX 1.	0.428
ENSAMXP00000032733	LOC103022761	ENSAMXP00000032733	ENSAMXP00000011540	ZP domain-containing protein.	ZP domain-containing protein.	0.419
ENSAMXP00000032733	LOC103023344	ENSAMXP00000032733	ENSAMXP00000004560	ZP domain-containing protein.	Uncharacterized protein.	0.419
ENSAMXP00000032733	LOC103032246	ENSAMXP00000032733	ENSAMXP00000035074	ZP domain-containing protein.	Zona pellucida glycoprotein 2, like 2.	0.423
ENSAMXP00000032733	LOC111196783	ENSAMXP00000032733	ENSAMXP00000009597	ZP domain-containing protein.	ZP domain-containing protein.	0.419
ENSAMXP00000032733	fam107b	ENSAMXP00000032733	ENSAMXP00000047921	ZP domain-containing protein.	Family with sequence similarity 107 member B.	0.419
ENSAMXP00000032857	ENSAMXP00000032971	ENSAMXP00000032857	ENSAMXP00000032971	ZP domain-containing protein.	Zona pellucida protein AX 1.	0.428
ENSAMXP00000032857	LOC103022761	ENSAMXP00000032857	ENSAMXP00000011540	ZP domain-containing protein.	ZP domain-containing protein.	0.419
ENSAMXP00000032857	LOC103023344	ENSAMXP00000032857	ENSAMXP00000004560	ZP domain-containing protein.	Uncharacterized protein.	0.419
ENSAMXP00000032857	LOC103032246	ENSAMXP00000032857	ENSAMXP00000035074	ZP domain-containing protein.	Zona pellucida glycoprotein 2, like 2.	0.423
ENSAMXP00000032857	LOC111196783	ENSAMXP00000032857	ENSAMXP00000009597	ZP domain-containing protein.	ZP domain-containing protein.	0.419
ENSAMXP00000032857	fam107b	ENSAMXP00000032857	ENSAMXP00000047921	ZP domain-containing protein.	Family with sequence similarity 107 member B.	0.419
ENSAMXP00000032971	ENSAMXP00000032733	ENSAMXP00000032971	ENSAMXP00000032733	Zona pellucida protein AX 1.	ZP domain-containing protein.	0.428
ENSAMXP00000032971	ENSAMXP00000032857	ENSAMXP00000032971	ENSAMXP00000032857	Zona pellucida protein AX 1.	ZP domain-containing protein.	0.428
ENSAMXP00000032971	ENSAMXP00000036671	ENSAMXP00000032971	ENSAMXP00000036671	Zona pellucida protein AX 1.	ZP domain-containing protein.	0.428
ENSAMXP00000032971	ENSAMXP00000041204	ENSAMXP00000032971	ENSAMXP00000041204	Zona pellucida protein AX 1.	ZP domain-containing protein.	0.428
ENSAMXP00000032971	LOC103023058	ENSAMXP00000032971	ENSAMXP00000043832	Zona pellucida protein AX 1.	ZP domain-containing protein.	0.428
ENSAMXP00000032971	LOC103033944	ENSAMXP00000032971	ENSAMXP00000040465	Zona pellucida protein AX 1.	ZP domain-containing protein.	0.428
ENSAMXP00000032971	LOC111193015	ENSAMXP00000032971	ENSAMXP00000038065	Zona pellucida protein AX 1.	ZP domain-containing protein.	0.428
ENSAMXP00000032971	LOC111197584	ENSAMXP00000032971	ENSAMXP00000042244	Zona pellucida protein AX 1.	ZP domain-containing protein.	0.428