13 items (Astyanax mexicanus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	W5KDX2_ASTMX	Stromal antigen 2b. (1226 aa)
	smc3	Structural maintenance of chromosomes protein. (1217 aa)
	LOC103044077	Stromal antigen 2a. (1255 aa)
	W5KR05_ASTMX	Stromal antigen 3. (365 aa)
	LOC103030832	RAD21 cohesin complex component like 1. (550 aa)
	smc1a	Structural maintenance of chromosomes protein. (1231 aa)
	W5LMH3_ASTMX	Structural maintenance of chromosomes protein. (1229 aa)
	rad21	RAD21 cohesin complex component b. (636 aa)
	stag1	Stromal antigen 1b. (1257 aa)
	LOC103039334	RAD21 cohesin complex component a. (637 aa)
	ENSAMXP00000033811	REC8 meiotic recombination protein b. (468 aa)
	ENSAMXP00000051046	Structural maintenance of chromosomes protein. (1209 aa)
	LOC103041458	Si:ch211-269e2.1. (1180 aa)

Your Current Organism:

Astyanax mexicanus

NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAMXP00000033811	ENSAMXP00000051046	ENSAMXP00000033811	ENSAMXP00000051046	REC8 meiotic recombination protein b.	Structural maintenance of chromosomes protein.	0.919
ENSAMXP00000033811	LOC103030832	ENSAMXP00000033811	ENSAMXP00000013363	REC8 meiotic recombination protein b.	RAD21 cohesin complex component like 1.	0.856
ENSAMXP00000033811	LOC103039334	ENSAMXP00000033811	ENSAMXP00000032739	REC8 meiotic recombination protein b.	RAD21 cohesin complex component a.	0.787
ENSAMXP00000033811	LOC103041458	ENSAMXP00000033811	ENSAMXP00000002648	REC8 meiotic recombination protein b.	Si:ch211-269e2.1.	0.824
ENSAMXP00000033811	LOC103044077	ENSAMXP00000033811	ENSAMXP00000007756	REC8 meiotic recombination protein b.	Stromal antigen 2a.	0.824
ENSAMXP00000033811	W5KDX2_ASTMX	ENSAMXP00000033811	ENSAMXP00000005783	REC8 meiotic recombination protein b.	Stromal antigen 2b.	0.824
ENSAMXP00000033811	W5KR05_ASTMX	ENSAMXP00000033811	ENSAMXP00000010017	REC8 meiotic recombination protein b.	Stromal antigen 3.	0.823
ENSAMXP00000033811	W5LMH3_ASTMX	ENSAMXP00000033811	ENSAMXP00000021035	REC8 meiotic recombination protein b.	Structural maintenance of chromosomes protein.	0.917
ENSAMXP00000033811	rad21	ENSAMXP00000033811	ENSAMXP00000021316	REC8 meiotic recombination protein b.	RAD21 cohesin complex component b.	0.787
ENSAMXP00000033811	smc1a	ENSAMXP00000033811	ENSAMXP00000013522	REC8 meiotic recombination protein b.	Structural maintenance of chromosomes protein.	0.917
ENSAMXP00000033811	smc3	ENSAMXP00000033811	ENSAMXP00000004591	REC8 meiotic recombination protein b.	Structural maintenance of chromosomes protein.	0.974
ENSAMXP00000033811	stag1	ENSAMXP00000033811	ENSAMXP00000028807	REC8 meiotic recombination protein b.	Stromal antigen 1b.	0.824
ENSAMXP00000051046	ENSAMXP00000033811	ENSAMXP00000051046	ENSAMXP00000033811	Structural maintenance of chromosomes protein.	REC8 meiotic recombination protein b.	0.919
ENSAMXP00000051046	LOC103030832	ENSAMXP00000051046	ENSAMXP00000013363	Structural maintenance of chromosomes protein.	RAD21 cohesin complex component like 1.	0.937
ENSAMXP00000051046	LOC103039334	ENSAMXP00000051046	ENSAMXP00000032739	Structural maintenance of chromosomes protein.	RAD21 cohesin complex component a.	0.937
ENSAMXP00000051046	LOC103041458	ENSAMXP00000051046	ENSAMXP00000002648	Structural maintenance of chromosomes protein.	Si:ch211-269e2.1.	0.869
ENSAMXP00000051046	LOC103044077	ENSAMXP00000051046	ENSAMXP00000007756	Structural maintenance of chromosomes protein.	Stromal antigen 2a.	0.869
ENSAMXP00000051046	W5KDX2_ASTMX	ENSAMXP00000051046	ENSAMXP00000005783	Structural maintenance of chromosomes protein.	Stromal antigen 2b.	0.869
ENSAMXP00000051046	W5KR05_ASTMX	ENSAMXP00000051046	ENSAMXP00000010017	Structural maintenance of chromosomes protein.	Stromal antigen 3.	0.864
ENSAMXP00000051046	rad21	ENSAMXP00000051046	ENSAMXP00000021316	Structural maintenance of chromosomes protein.	RAD21 cohesin complex component b.	0.937