STRINGSTRING
ccnt2 ccnt2 sf3b3 sf3b3 W5KH70_ASTMX W5KH70_ASTMX gemin5 gemin5 Rbm41 Rbm41 prpf31 prpf31 Sart3 Sart3 rbmx rbmx prpf8 prpf8 lsm10 lsm10 Snrnp35 Snrnp35 LOC103040872 LOC103040872 LOC103047415 LOC103047415 Ccnt1 Ccnt1 LOC103042547 LOC103042547 snrpc snrpc snrnp70 snrnp70 ENSAMXP00000033298 ENSAMXP00000033298 coil coil snrpd3 snrpd3 toe1 toe1 Ncbp2 Ncbp2 lsm11 lsm11 Lrmda Lrmda LOC103042719 LOC103042719 LOC103032763 LOC103032763 Snrpa1 Snrpa1 lsm3 lsm3 Rbm22 Rbm22 mettl16 mettl16 ENSAMXP00000047138 ENSAMXP00000047138 lsm4 lsm4 LOC103028284 LOC103028284 snrpb2 snrpb2 ENSAMXP00000051040 ENSAMXP00000051040 LOC103033230 LOC103033230 ENSAMXP00000051292 ENSAMXP00000051292 snrpa snrpa rnpc3 rnpc3 eftud2 eftud2 ro60 ro60 larp7 larp7
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ccnt2Cyclin T2a; Belongs to the cyclin family. (704 aa)
sf3b3Splicing factor 3b, subunit 3. (1217 aa)
W5KH70_ASTMXPRP4 pre-mRNA processing factor 4 homolog (yeast). (473 aa)
gemin5Gem (nuclear organelle) associated protein 5. (1484 aa)
Rbm41RNA binding motif protein 41. (457 aa)
prpf31PRP31 pre-mRNA processing factor 31 homolog (yeast). (510 aa)
Sart3Spliceosome associated factor 3, U4/U6 recycling protein. (968 aa)
rbmxRNA binding motif protein X-linked. (384 aa)
prpf8Pre-mRNA processing factor 8. (2333 aa)
lsm10LSM10, U7 small nuclear RNA associated. (120 aa)
Snrnp35Small nuclear ribonucleoprotein 35 (U11/U12). (209 aa)
LOC103040872Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
LOC103047415HEXIM P-TEFb complex subunit 1. (395 aa)
Ccnt1Cyclin T1; Belongs to the cyclin family. (668 aa)
LOC103042547Methylphosphate capping enzyme. (786 aa)
snrpcU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (182 aa)
snrnp70RRM domain-containing protein. (499 aa)
ENSAMXP00000033298Uncharacterized protein. (451 aa)
coilCoilin p80. (537 aa)
snrpd3Small nuclear ribonucleoprotein Sm D3. (128 aa)
toe1Target of EGR1, exonuclease. (503 aa)
Ncbp2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (168 aa)
lsm11LSM11, U7 small nuclear RNA associated. (334 aa)
LrmdaUncharacterized protein. (54 aa)
LOC103042719Uncharacterized protein. (422 aa)
LOC103032763Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (137 aa)
Snrpa1Small nuclear ribonucleoprotein polypeptide A. (232 aa)
lsm3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
Rbm22RNA binding motif protein 22. (482 aa)
mettl16Methyltransferase like 16. (741 aa)
ENSAMXP00000047138Leucine rich melanocyte differentiation associated. (247 aa)
lsm4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (142 aa)
LOC103028284Cyclin T2b; Belongs to the cyclin family. (608 aa)
snrpb2Small nuclear ribonucleoprotein polypeptide B2. (219 aa)
ENSAMXP00000051040Small nuclear ribonucleoprotein polypeptide A. (95 aa)
LOC103033230Si:ch1073-157b13.1. (710 aa)
ENSAMXP00000051292Leucine rich repeat containing 51. (183 aa)
snrpaSmall nuclear ribonucleoprotein polypeptide A. (281 aa)
rnpc3RNA-binding region (RNP1, RRM) containing 3. (508 aa)
eftud2Elongation factor Tu GTP binding domain containing 2. (977 aa)
ro60Ro60, Y RNA binding protein. (542 aa)
larp7La ribonucleoprotein domain family, member 7. (565 aa)
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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