66 items (Astyanax mexicanus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103024637	ASD2 domain-containing protein. (1625 aa)
	LOC103035083	Vinculin b. (1065 aa)
	nf2	Neurofibromin 2a (merlin). (591 aa)
	SHROOM2	Shroom family member 2. (1573 aa)
	shroom3	Shroom family member 3. (1874 aa)
	LOC103047063	Shroom family member 1. (1460 aa)
	ACTN2	Actinin alpha 2. (890 aa)
	sptan1	Spectrin alpha, non-erythrocytic 1. (2503 aa)
	ENSAMXP00000043039	annotation not available (99 aa)
	LOC103028505	PH domain-containing protein. (2305 aa)
	actn1	Actinin, alpha 1. (923 aa)
	LOC103032213	Spectrin beta chain; Belongs to the spectrin family. (2388 aa)
	ENSAMXP00000040902	RabBD domain-containing protein. (286 aa)
	ENSAMXP00000040485	Si:dkey-30c15.10. (897 aa)
	pjvk	Pejvakin. (369 aa)
	LOC103032993	Protein phosphatase 1 regulatory subunit 9A-like A. (1437 aa)
	LOC103029830	Caldesmon 1b. (785 aa)
	LOC103033900	Melanophilin b. (534 aa)
	ENSAMXP00000036852	Protein phosphatase 1 regulatory subunit 9A-like B. (1214 aa)
	llgl2	LLGL scribble cell polarity complex component 2. (1041 aa)
	ENSAMXP00000036445	ASD2 domain-containing protein. (440 aa)
	ENSAMXP00000036322	SH3 domain-containing protein. (225 aa)
	LOC103033969	Drebrin-like a. (488 aa)
	dbnl	Drebrin-like b. (470 aa)
	cotl1	Coactosin-like F-actin binding protein 1. (166 aa)
	ENSAMXP00000032701	PH domain-containing protein. (202 aa)
	LOC103028056	Si:ch211-106h4.9. (1212 aa)
	ENSAMXP00000029792	Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family. (215 aa)
	LOC103046695	Neurofibromin 2b (merlin). (587 aa)
	llgl1	LLGL scribble cell polarity complex component 1. (1042 aa)
	ENSAMXP00000028508	Calponin-homology (CH) domain-containing protein. (99 aa)
	ENSAMXP00000027852	Uncharacterized protein. (624 aa)
	ppp1r9a	Protein phosphatase 1, regulatory subunit 9A. (1144 aa)
	LOC103040076	Si:dkeyp-66d1.7. (293 aa)
	cldn5	Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family. (215 aa)
	LOC103047303	Myeloid associated differentiation marker. (296 aa)
	LOC103029577	MARVEL domain-containing protein. (304 aa)
	W5LSA1_ASTMX	Uncharacterized protein. (283 aa)
	W5LQ48_ASTMX	Actinin alpha 3b. (799 aa)
	W5LQ08_ASTMX	Spectrin beta chain; Belongs to the spectrin family. (2443 aa)
	W5LNJ5_ASTMX	Uncharacterized protein. (487 aa)
	Kncn	Kinocilin. (100 aa)
	LOC103034507	Flotillin; Belongs to the band 7/mec-2 family. Flotillin subfamily. (425 aa)
	W5L9B0_ASTMX	Actinin alpha 3a. (897 aa)
	LOC103027319	Flotillin; Belongs to the band 7/mec-2 family. Flotillin subfamily. (423 aa)
	W5L338_ASTMX	Si:dkey-40c11.2. (704 aa)
	LOC103024106	Actinin, alpha 2b. (896 aa)
	mlph	Melanophilin a. (580 aa)
	LOC103033421	Spectrin beta chain; Belongs to the spectrin family. (2358 aa)
	W5KLR5_ASTMX	PH domain-containing protein. (2145 aa)
	W5KL43_ASTMX	Uncharacterized protein. (1909 aa)
	W5KHK9_ASTMX	Drebrin 1. (497 aa)
	SPTBN1	Spectrin beta chain; Belongs to the spectrin family. (2110 aa)
	golgb1	Golgin B1. (2986 aa)
	LOC103038989	Vinculin a. (1131 aa)
	plekhh2	Pleckstrin homology domain containing, family H (with MyTH4 domain) member 2. (1426 aa)
	actn4	Actinin, alpha 4. (899 aa)
	WDR1	WD repeat domain 1. (606 aa)
	LOC103047712	Spectrin beta chain; Belongs to the spectrin family. (2355 aa)
	LOC103037311	Hematopoietic cell-specific Lyn substrate 1. (539 aa)
	PPP1R9B	Protein phosphatase 1 regulatory subunit 9B. (536 aa)
	ENSAMXP00000052342	Uncharacterized protein. (96 aa)
	LOC103042092	Protein phosphatase 1, regulatory subunit 9Ba. (824 aa)
	Shroom2	PDZ domain-containing protein. (91 aa)
	anln	Anillin, actin binding protein. (1173 aa)
	ENSAMXP00000051108	Uncharacterized protein. (202 aa)

Your Current Organism:

Astyanax mexicanus

NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACTN2	LOC103035083	ENSAMXP00000045945	ENSAMXP00000050422	Actinin alpha 2.	Vinculin b.	0.641
ACTN2	LOC103038989	ENSAMXP00000045945	ENSAMXP00000004908	Actinin alpha 2.	Vinculin a.	0.641
ENSAMXP00000027852	ENSAMXP00000032701	ENSAMXP00000027852	ENSAMXP00000032701	Uncharacterized protein.	PH domain-containing protein.	0.861
ENSAMXP00000027852	sptan1	ENSAMXP00000027852	ENSAMXP00000045709	Uncharacterized protein.	Spectrin alpha, non-erythrocytic 1.	0.848
ENSAMXP00000028508	sptan1	ENSAMXP00000028508	ENSAMXP00000045709	Calponin-homology (CH) domain-containing protein.	Spectrin alpha, non-erythrocytic 1.	0.863
ENSAMXP00000029792	cldn5	ENSAMXP00000029792	ENSAMXP00000026626	Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family.	Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family.	0.657
ENSAMXP00000032701	ENSAMXP00000027852	ENSAMXP00000032701	ENSAMXP00000027852	PH domain-containing protein.	Uncharacterized protein.	0.861
ENSAMXP00000032701	SPTBN1	ENSAMXP00000032701	ENSAMXP00000006890	PH domain-containing protein.	Spectrin beta chain; Belongs to the spectrin family.	0.874
ENSAMXP00000032701	sptan1	ENSAMXP00000032701	ENSAMXP00000045709	PH domain-containing protein.	Spectrin alpha, non-erythrocytic 1.	0.863
ENSAMXP00000036322	ENSAMXP00000051108	ENSAMXP00000036322	ENSAMXP00000051108	SH3 domain-containing protein.	Uncharacterized protein.	0.887
ENSAMXP00000036322	LOC103037311	ENSAMXP00000036322	ENSAMXP00000053989	SH3 domain-containing protein.	Hematopoietic cell-specific Lyn substrate 1.	0.900
ENSAMXP00000040485	LOC103027319	ENSAMXP00000040485	ENSAMXP00000014649	Si:dkey-30c15.10.	Flotillin; Belongs to the band 7/mec-2 family. Flotillin subfamily.	0.488
ENSAMXP00000040485	LOC103034507	ENSAMXP00000040485	ENSAMXP00000016534	Si:dkey-30c15.10.	Flotillin; Belongs to the band 7/mec-2 family. Flotillin subfamily.	0.488
ENSAMXP00000043039	sptan1	ENSAMXP00000043039	ENSAMXP00000045709	annotation not available	Spectrin alpha, non-erythrocytic 1.	0.863
ENSAMXP00000051108	ENSAMXP00000036322	ENSAMXP00000051108	ENSAMXP00000036322	Uncharacterized protein.	SH3 domain-containing protein.	0.887
LOC103024106	LOC103035083	ENSAMXP00000011442	ENSAMXP00000050422	Actinin, alpha 2b.	Vinculin b.	0.641
LOC103024106	LOC103038989	ENSAMXP00000011442	ENSAMXP00000004908	Actinin, alpha 2b.	Vinculin a.	0.641
LOC103027319	ENSAMXP00000040485	ENSAMXP00000014649	ENSAMXP00000040485	Flotillin; Belongs to the band 7/mec-2 family. Flotillin subfamily.	Si:dkey-30c15.10.	0.488
LOC103027319	anln	ENSAMXP00000014649	ENSAMXP00000051697	Flotillin; Belongs to the band 7/mec-2 family. Flotillin subfamily.	Anillin, actin binding protein.	0.488
LOC103028505	sptan1	ENSAMXP00000042463	ENSAMXP00000045709	PH domain-containing protein.	Spectrin alpha, non-erythrocytic 1.	0.863