STRINGSTRING
tgfb1 tgfb1 LOC103024607 LOC103024607 NCSTN NCSTN mbtps2 mbtps2 rhbdd1 rhbdd1 tgfb2 tgfb2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
tgfb1Transforming growth factor beta; Belongs to the TGF-beta family. (386 aa)
LOC103024607Transforming growth factor beta; Belongs to the TGF-beta family. (377 aa)
NCSTNNicastrin. (704 aa)
mbtps2Membrane-bound transcription factor peptidase, site 2. (494 aa)
rhbdd1Rhomboid domain containing 1. (338 aa)
tgfb2Transforming growth factor beta; Belongs to the TGF-beta family. (401 aa)
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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