27 items (Astyanax mexicanus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103024490	Cellular communication network factor 4a. (359 aa)
	LOC103039741	Membrane bound O-acyltransferase domain containing 2b; Belongs to the membrane-bound acyltransferase family. (496 aa)
	rnf2	Ring finger protein 2. (336 aa)
	Sox6	SRY-box transcription factor 6. (787 aa)
	ccn2	Cellular communication network factor 2a. (362 aa)
	Sox5	SRY-box transcription factor 5. (763 aa)
	LOC103046785	Membrane bound O-acyltransferase domain containing 2a; Belongs to the membrane-bound acyltransferase family. (499 aa)
	W5LMT7_ASTMX	Lysyl oxidase-like 2a. (720 aa)
	trps1	Trichorhinophalangeal syndrome I. (1295 aa)
	W5LU02_ASTMX	Gremlin. (175 aa)
	LOC103042228	Chondroadherin-like b. (782 aa)
	LOC103028218	Golgi glycoprotein 1a. (1152 aa)
	LOC103035781	Parathyroid hormone-like hormone a. (203 aa)
	LOC103042873	Midkine a. (145 aa)
	rflna	Refilin A. (220 aa)
	ENSAMXP00000035697	Uncharacterized protein. (110 aa)
	LOC103041151	Parathyroid hormone-like hormone b. (191 aa)
	rflnb	Refilin B. (196 aa)
	LOC103046407	Protein kinase domain containing, cytoplasmic b. (464 aa)
	ENSAMXP00000042098	Midkine b. (157 aa)
	LOC103031258	Lysyl oxidase-like 2b. (770 aa)
	ENSAMXP00000045325	Chondroadherin-like a. (620 aa)
	RING1	Ring finger protein 1. (377 aa)
	LOC103029481	Fibroblast growth factor 18a; Belongs to the heparin-binding growth factors family. (208 aa)
	LOC103038759	Golgi glycoprotein 1b. (1147 aa)
	LOC103046764	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (210 aa)
	pkdcc	Protein kinase domain containing, cytoplasmic a. (476 aa)

Your Current Organism:

Astyanax mexicanus

NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAMXP00000035697	LOC103041151	ENSAMXP00000035697	ENSAMXP00000035971	Uncharacterized protein.	Parathyroid hormone-like hormone b.	0.456
LOC103028218	LOC103038759	ENSAMXP00000033088	ENSAMXP00000048509	Golgi glycoprotein 1a.	Golgi glycoprotein 1b.	0.900
LOC103038759	LOC103028218	ENSAMXP00000048509	ENSAMXP00000033088	Golgi glycoprotein 1b.	Golgi glycoprotein 1a.	0.900
LOC103039741	LOC103046785	ENSAMXP00000004873	ENSAMXP00000017868	Membrane bound O-acyltransferase domain containing 2b; Belongs to the membrane-bound acyltransferase family.	Membrane bound O-acyltransferase domain containing 2a; Belongs to the membrane-bound acyltransferase family.	0.908
LOC103041151	ENSAMXP00000035697	ENSAMXP00000035971	ENSAMXP00000035697	Parathyroid hormone-like hormone b.	Uncharacterized protein.	0.456
LOC103046785	LOC103039741	ENSAMXP00000017868	ENSAMXP00000004873	Membrane bound O-acyltransferase domain containing 2a; Belongs to the membrane-bound acyltransferase family.	Membrane bound O-acyltransferase domain containing 2b; Belongs to the membrane-bound acyltransferase family.	0.908
Sox5	Sox6	ENSAMXP00000007797	ENSAMXP00000006659	SRY-box transcription factor 5.	SRY-box transcription factor 6.	0.770
Sox6	Sox5	ENSAMXP00000006659	ENSAMXP00000007797	SRY-box transcription factor 6.	SRY-box transcription factor 5.	0.770