14 items (Astyanax mexicanus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cdk5	Cyclin-dependent kinase 5; Belongs to the protein kinase superfamily. (292 aa)
	LOC103024607	Transforming growth factor beta; Belongs to the TGF-beta family. (377 aa)
	snx25	Sorting nexin 25. (963 aa)
	tgfb1	Transforming growth factor beta; Belongs to the TGF-beta family. (386 aa)
	W5K0T1_ASTMX	Kinesin family member 16Ba; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (1232 aa)
	mvb12a	Uncharacterized protein. (279 aa)
	ENSAMXP00000045176	UV radiation resistance associated gene. (683 aa)
	znrf3	Zinc and ring finger 3. (890 aa)
	ENSAMXP00000030449	Uncharacterized protein. (107 aa)
	W5LQ23_ASTMX	Legumain. (430 aa)
	rnf43	RING-type domain-containing protein. (843 aa)
	pik3r4	Phosphoinositide-3-kinase, regulatory subunit 4. (1342 aa)
	pcsk9	Proprotein convertase subtilisin/kexin type 9. (675 aa)
	ENSAMXP00000050058	Uncharacterized protein. (106 aa)

Your Current Organism:

Astyanax mexicanus

NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAMXP00000045176	pik3r4	ENSAMXP00000045176	ENSAMXP00000015738	UV radiation resistance associated gene.	Phosphoinositide-3-kinase, regulatory subunit 4.	0.996
LOC103024607	tgfb1	ENSAMXP00000010023	ENSAMXP00000002667	Transforming growth factor beta; Belongs to the TGF-beta family.	Transforming growth factor beta; Belongs to the TGF-beta family.	0.902
pik3r4	ENSAMXP00000045176	ENSAMXP00000015738	ENSAMXP00000045176	Phosphoinositide-3-kinase, regulatory subunit 4.	UV radiation resistance associated gene.	0.996
rnf43	znrf3	ENSAMXP00000016402	ENSAMXP00000043428	RING-type domain-containing protein.	Zinc and ring finger 3.	0.757
tgfb1	LOC103024607	ENSAMXP00000002667	ENSAMXP00000010023	Transforming growth factor beta; Belongs to the TGF-beta family.	Transforming growth factor beta; Belongs to the TGF-beta family.	0.902
znrf3	rnf43	ENSAMXP00000043428	ENSAMXP00000016402	Zinc and ring finger 3.	RING-type domain-containing protein.	0.757