26 items (Astyanax mexicanus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	W5LL88_ASTMX	Sp8 transcription factor. (441 aa)
	crbn	Cereblon. (445 aa)
	sec23a	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (765 aa)
	pdlim7	PDZ and LIM domain 7. (509 aa)
	Pi4k2b	Phosphatidylinositol 4-kinase type 2 beta. (469 aa)
	rnf2	Ring finger protein 2. (336 aa)
	LOC103040212	Basic helix-loop-helix family, member a9. (294 aa)
	nipbl	Nipped-B protein. (2745 aa)
	Tbx5	T-box transcription factor 5a. (522 aa)
	Med12	Mediator complex subunit 12. (2026 aa)
	osr2	Odd-skipped related transciption factor 2. (274 aa)
	Sp9	Sp9 transcription factor. (443 aa)
	osr1	Odd-skipped related transcription factor 1. (264 aa)
	W5LU11_ASTMX	BHLH domain-containing protein. (305 aa)
	LOC103029696	Uncharacterized protein. (205 aa)
	shh	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development. (429 aa)
	CDH2	Cadherin 2; Cadherins are calcium-dependent cell adhesion proteins. (903 aa)
	hand2	Heart and neural crest derivatives expressed 2. (200 aa)
	ENSAMXP00000041750	Uncharacterized protein. (104 aa)
	hoxc8	Homeobox C8a. (254 aa)
	dlx5	Distal-less homeobox 5a. (276 aa)
	sp8	Sp8 transcription factor a. (459 aa)
	RING1	Ring finger protein 1. (377 aa)
	LOC103030680	Cadherin 2, type 1, N-cadherin (neuronal); Cadherins are calcium-dependent cell adhesion proteins. (898 aa)
	arl6	ADP-ribosylation factor-like 6; Belongs to the small GTPase superfamily. Arf family. (206 aa)
	fgf16	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (206 aa)

Your Current Organism:

Astyanax mexicanus

NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDH2	LOC103030680	ENSAMXP00000031306	ENSAMXP00000046775	Cadherin 2; Cadherins are calcium-dependent cell adhesion proteins.	Cadherin 2, type 1, N-cadherin (neuronal); Cadherins are calcium-dependent cell adhesion proteins.	0.901
LOC103030680	CDH2	ENSAMXP00000046775	ENSAMXP00000031306	Cadherin 2, type 1, N-cadherin (neuronal); Cadherins are calcium-dependent cell adhesion proteins.	Cadherin 2; Cadherins are calcium-dependent cell adhesion proteins.	0.901
Tbx5	hand2	ENSAMXP00000009448	ENSAMXP00000032184	T-box transcription factor 5a.	Heart and neural crest derivatives expressed 2.	0.624
dlx5	hand2	ENSAMXP00000044944	ENSAMXP00000032184	Distal-less homeobox 5a.	Heart and neural crest derivatives expressed 2.	0.435
hand2	Tbx5	ENSAMXP00000032184	ENSAMXP00000009448	Heart and neural crest derivatives expressed 2.	T-box transcription factor 5a.	0.624
hand2	dlx5	ENSAMXP00000032184	ENSAMXP00000044944	Heart and neural crest derivatives expressed 2.	Distal-less homeobox 5a.	0.435
hand2	pdlim7	ENSAMXP00000032184	ENSAMXP00000003150	Heart and neural crest derivatives expressed 2.	PDZ and LIM domain 7.	0.402
pdlim7	hand2	ENSAMXP00000003150	ENSAMXP00000032184	PDZ and LIM domain 7.	Heart and neural crest derivatives expressed 2.	0.402