37 items (Astyanax mexicanus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Ap1ar	Adaptor related protein complex 1 associated regulatory protein. (313 aa)
	ntn4	Netrin 4. (585 aa)
	W5KNR0_ASTMX	Uncharacterized protein. (971 aa)
	LOC103039629	Im:7154036. (647 aa)
	LOC103043830	Ephrin-A1a; Belongs to the ephrin family. (224 aa)
	W5KRQ0_ASTMX	Laminin, gamma 3. (1625 aa)
	Lamb2	Laminin, beta 2 (laminin S). (1771 aa)
	Ntng1	Netrin g1a. (530 aa)
	LOC103022061	Uncharacterized protein. (574 aa)
	W5L9N0_ASTMX	Ras association and DIL domains. (1116 aa)
	LOC103023228	Si:ch211-176g6.2. (1155 aa)
	kif14	Kinesin family member 14; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (1612 aa)
	W5LIL1_ASTMX	Eph receptor B3a. (858 aa)
	LOC103027498	Si:ch211-158d24.2. (496 aa)
	lamc1	Laminin, gamma 1. (1595 aa)
	Ntng2	Netrin g2a. (512 aa)
	nrp1	Neuropilin; Belongs to the neuropilin family. (924 aa)
	ENSAMXP00000033268	Netrin G2. (527 aa)
	LOC103035740	Laminin, beta 2-like. (1838 aa)
	vamp3	Vesicle-associated membrane protein 3 (cellubrevin). (102 aa)
	LOC103041350	Fermitin family member 3b. (640 aa)
	Ush2a	Uncharacterized protein. (1479 aa)
	ENSAMXP00000042356	Parvin, gamma. (276 aa)
	LOC111196193	Parvin, gamma. (312 aa)
	LOC103026945	Laminin, beta 1b. (1772 aa)
	axl	Uncharacterized protein. (911 aa)
	LOC103039330	Si:dkey-202e22.2. (617 aa)
	LOC103021450	Ephrin-A1b; Belongs to the ephrin family. (233 aa)
	LOC103026996	Laminin, beta 1a. (1785 aa)
	bves	Blood vessel epicardial substance. (359 aa)
	W5K2Q0_ASTMX	Uncharacterized protein. (879 aa)
	mertk	C-mer proto-oncogene tyrosine kinase a. (943 aa)
	fzd4	Frizzled class receptor 4; Belongs to the G-protein coupled receptor Fz/Smo family. (526 aa)
	akip1	A kinase (PRKA) interacting protein 1. (180 aa)
	W5KCJ1_ASTMX	Vav 3 guanine nucleotide exchange factor b. (297 aa)
	ilk	Integrin-linked kinase. (452 aa)
	W5KDT9_ASTMX	Fibronectin 1a. (2159 aa)

Your Current Organism:

Astyanax mexicanus

NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAMXP00000033268	Ntng2	ENSAMXP00000033268	ENSAMXP00000027941	Netrin G2.	Netrin g2a.	0.901
ENSAMXP00000042356	LOC103039629	ENSAMXP00000042356	ENSAMXP00000009353	Parvin, gamma.	Im:7154036.	0.506
ENSAMXP00000042356	LOC103041350	ENSAMXP00000042356	ENSAMXP00000037034	Parvin, gamma.	Fermitin family member 3b.	0.506
ENSAMXP00000042356	ilk	ENSAMXP00000042356	ENSAMXP00000052906	Parvin, gamma.	Integrin-linked kinase.	0.917
LOC103021450	W5K2Q0_ASTMX	ENSAMXP00000052525	ENSAMXP00000001861	Ephrin-A1b; Belongs to the ephrin family.	Uncharacterized protein.	0.506
LOC103021450	W5LIL1_ASTMX	ENSAMXP00000052525	ENSAMXP00000019673	Ephrin-A1b; Belongs to the ephrin family.	Eph receptor B3a.	0.506
LOC103026945	Ush2a	ENSAMXP00000044738	ENSAMXP00000037750	Laminin, beta 1b.	Uncharacterized protein.	0.442
LOC103026945	W5KRQ0_ASTMX	ENSAMXP00000044738	ENSAMXP00000010262	Laminin, beta 1b.	Laminin, gamma 3.	0.609
LOC103026945	lamc1	ENSAMXP00000044738	ENSAMXP00000021501	Laminin, beta 1b.	Laminin, gamma 1.	0.609
LOC103026996	Ush2a	ENSAMXP00000000882	ENSAMXP00000037750	Laminin, beta 1a.	Uncharacterized protein.	0.442
LOC103026996	W5KRQ0_ASTMX	ENSAMXP00000000882	ENSAMXP00000010262	Laminin, beta 1a.	Laminin, gamma 3.	0.778
LOC103026996	lamc1	ENSAMXP00000000882	ENSAMXP00000021501	Laminin, beta 1a.	Laminin, gamma 1.	0.778
LOC103035740	Ush2a	ENSAMXP00000034658	ENSAMXP00000037750	Laminin, beta 2-like.	Uncharacterized protein.	0.442
LOC103035740	W5KRQ0_ASTMX	ENSAMXP00000034658	ENSAMXP00000010262	Laminin, beta 2-like.	Laminin, gamma 3.	0.609
LOC103035740	lamc1	ENSAMXP00000034658	ENSAMXP00000021501	Laminin, beta 2-like.	Laminin, gamma 1.	0.609
LOC103039629	ENSAMXP00000042356	ENSAMXP00000009353	ENSAMXP00000042356	Im:7154036.	Parvin, gamma.	0.506
LOC103039629	LOC111196193	ENSAMXP00000009353	ENSAMXP00000044721	Im:7154036.	Parvin, gamma.	0.506
LOC103039629	ilk	ENSAMXP00000009353	ENSAMXP00000052906	Im:7154036.	Integrin-linked kinase.	0.741
LOC103041350	ENSAMXP00000042356	ENSAMXP00000037034	ENSAMXP00000042356	Fermitin family member 3b.	Parvin, gamma.	0.506
LOC103041350	LOC111196193	ENSAMXP00000037034	ENSAMXP00000044721	Fermitin family member 3b.	Parvin, gamma.	0.506