15 items (Astyanax mexicanus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103030080	Prostaglandin E receptor 4 (subtype EP4) b. (464 aa)
	Tbx21	T-box transcription factor 21. (577 aa)
	hlx	H2.0-like homeo box 1 (Drosophila). (374 aa)
	batf	Basic leucine zipper transcription factor, ATF-like. (123 aa)
	mtor	Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family. (2518 aa)
	LOC103035115	Ring finger and CCCH-type domains 1b. (1124 aa)
	Gpr183	G protein-coupled receptor 183a; Belongs to the G-protein coupled receptor 1 family. (370 aa)
	il6r	Interleukin 6 receptor. (591 aa)
	LOC103025471	Prostaglandin E receptor 4 (subtype EP4) a; Belongs to the G-protein coupled receptor 1 family. (452 aa)
	rc3h1	Ring finger and CCCH-type domains 1a. (1106 aa)
	tmem98	Transmembrane protein 98. (222 aa)
	lef1	Lymphoid enhancer-binding factor 1. (384 aa)
	LOC103033011	Prostaglandin E receptor 4 (subtype EP4) c; Belongs to the G-protein coupled receptor 1 family. (463 aa)
	LOC103041682	Interleukin-12 subunit beta; Belongs to the type I cytokine receptor family. Type 3 subfamily. (331 aa)
	LOC103040345	Ring finger and CCCH-type domains 2. (1061 aa)

Your Current Organism:

Astyanax mexicanus

NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103035115	LOC103040345	ENSAMXP00000019814	ENSAMXP00000006962	Ring finger and CCCH-type domains 1b.	Ring finger and CCCH-type domains 2.	0.578
LOC103040345	LOC103035115	ENSAMXP00000006962	ENSAMXP00000019814	Ring finger and CCCH-type domains 2.	Ring finger and CCCH-type domains 1b.	0.578
LOC103040345	rc3h1	ENSAMXP00000006962	ENSAMXP00000039649	Ring finger and CCCH-type domains 2.	Ring finger and CCCH-type domains 1a.	0.580
Tbx21	batf	ENSAMXP00000010803	ENSAMXP00000014215	T-box transcription factor 21.	Basic leucine zipper transcription factor, ATF-like.	0.411
Tbx21	hlx	ENSAMXP00000010803	ENSAMXP00000013823	T-box transcription factor 21.	H2.0-like homeo box 1 (Drosophila).	0.580
batf	Tbx21	ENSAMXP00000014215	ENSAMXP00000010803	Basic leucine zipper transcription factor, ATF-like.	T-box transcription factor 21.	0.411
hlx	Tbx21	ENSAMXP00000013823	ENSAMXP00000010803	H2.0-like homeo box 1 (Drosophila).	T-box transcription factor 21.	0.580
rc3h1	LOC103040345	ENSAMXP00000039649	ENSAMXP00000006962	Ring finger and CCCH-type domains 1a.	Ring finger and CCCH-type domains 2.	0.580