12 items (Astyanax mexicanus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	tgfb1	Transforming growth factor beta; Belongs to the TGF-beta family. (386 aa)
	LOC103024031	Complement component 1, q subcomponent, C chain. (241 aa)
	Rb1	Retinoblastoma 1. (882 aa)
	fadd	Fas (tnfrsf6)-associated via death domain. (190 aa)
	LOC103037118	Caspase 10, apoptosis-related cysteine peptidase; Belongs to the peptidase C14A family. (558 aa)
	LOC103024607	Transforming growth factor beta; Belongs to the TGF-beta family. (377 aa)
	LOC103039790	Interferon regulatory factor 2 binding protein 2b. (521 aa)
	il34	Interleukin 34. (210 aa)
	adipoq	Adiponectin, C1Q and collagen domain containing, b. (309 aa)
	LOC103036379	Caspase 8, apoptosis-related cysteine peptidase; Belongs to the peptidase C14A family. (484 aa)
	LOC103045744	Colony stimulating factor 1a (macrophage). (531 aa)
	ENSAMXP00000054825	Colony stimulating factor 1b (macrophage). (298 aa)

Your Current Organism:

Astyanax mexicanus

NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAMXP00000054825	il34	ENSAMXP00000054825	ENSAMXP00000032391	Colony stimulating factor 1b (macrophage).	Interleukin 34.	0.822
LOC103024607	tgfb1	ENSAMXP00000010023	ENSAMXP00000002667	Transforming growth factor beta; Belongs to the TGF-beta family.	Transforming growth factor beta; Belongs to the TGF-beta family.	0.902
LOC103036379	fadd	ENSAMXP00000047551	ENSAMXP00000007593	Caspase 8, apoptosis-related cysteine peptidase; Belongs to the peptidase C14A family.	Fas (tnfrsf6)-associated via death domain.	0.997
LOC103037118	fadd	ENSAMXP00000007984	ENSAMXP00000007593	Caspase 10, apoptosis-related cysteine peptidase; Belongs to the peptidase C14A family.	Fas (tnfrsf6)-associated via death domain.	0.996
LOC103045744	il34	ENSAMXP00000049426	ENSAMXP00000032391	Colony stimulating factor 1a (macrophage).	Interleukin 34.	0.822
fadd	LOC103036379	ENSAMXP00000007593	ENSAMXP00000047551	Fas (tnfrsf6)-associated via death domain.	Caspase 8, apoptosis-related cysteine peptidase; Belongs to the peptidase C14A family.	0.997
fadd	LOC103037118	ENSAMXP00000007593	ENSAMXP00000007984	Fas (tnfrsf6)-associated via death domain.	Caspase 10, apoptosis-related cysteine peptidase; Belongs to the peptidase C14A family.	0.996
il34	ENSAMXP00000054825	ENSAMXP00000032391	ENSAMXP00000054825	Interleukin 34.	Colony stimulating factor 1b (macrophage).	0.822
il34	LOC103045744	ENSAMXP00000032391	ENSAMXP00000049426	Interleukin 34.	Colony stimulating factor 1a (macrophage).	0.822
tgfb1	LOC103024607	ENSAMXP00000002667	ENSAMXP00000010023	Transforming growth factor beta; Belongs to the TGF-beta family.	Transforming growth factor beta; Belongs to the TGF-beta family.	0.902